Analysis of interatomic Contacts of Structural Units in PDB entry:
6AA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AA8 entry

There are 6 chains in PDB entry 6AA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 280
B
 HIS 0TYR 280
C
 LYS 2TYR 280
D
 LYS 2TYR 280
E
 LYS 2LYS 282
F
 LYS 2TYR 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 90 helices in PDB entry 6AA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
33 54Right-handed alpha
Helix 3
AA3
A
58 68Right-handed alpha
Helix 4
AA4
A
74 79Right-handed 310
Helix 5
AA5
A
91 106Right-handed alpha
Helix 6
AA6
A
120 126Right-handed alpha
Helix 7
AA7
A
130 132Right-handed 310
Helix 8
AA8
A
158 172Right-handed alpha
Helix 9
AA9
A
186 204Right-handed alpha
Helix 10
AB1
A
208 220Right-handed alpha
Helix 11
AB2
A
225 234Right-handed alpha
Helix 12
AB3
A
234 250Right-handed alpha
Helix 13
AB4
A
251 255Right-handed 310
Helix 14
AB5
A
257 266Right-handed alpha
Helix 15
AB6
A
270 274Right-handed 310
Helix 16
AB7
B
10 22Right-handed alpha
Helix 17
AB8
B
33 54Right-handed alpha
Helix 18
AB9
B
58 68Right-handed alpha
Helix 19
AC1
B
74 79Right-handed 310
Helix 20
AC2
B
91 106Right-handed alpha
Helix 21
AC3
B
120 126Right-handed alpha
Helix 22
AC4
B
130 132Right-handed 310
Helix 23
AC5
B
158 172Right-handed alpha
Helix 24
AC6
B
186 204Right-handed alpha
Helix 25
AC7
B
208 221Right-handed alpha
Helix 26
AC8
B
225 234Right-handed alpha
Helix 27
AC9
B
234 250Right-handed alpha
Helix 28
AD1
B
251 255Right-handed 310
Helix 29
AD2
B
257 266Right-handed alpha
Helix 30
AD3
B
270 274Right-handed 310
Helix 31
AD4
C
10 23Right-handed alpha
Helix 32
AD5
C
33 54Right-handed alpha
Helix 33
AD6
C
58 68Right-handed alpha
Helix 34
AD7
C
74 79Right-handed 310
Helix 35
AD8
C
91 106Right-handed alpha
Helix 36
AD9
C
120 127Right-handed alpha
Helix 37
AE1
C
130 132Right-handed 310
Helix 38
AE2
C
158 172Right-handed alpha
Helix 39
AE3
C
186 204Right-handed alpha
Helix 40
AE4
C
208 221Right-handed alpha
Helix 41
AE5
C
225 234Right-handed alpha
Helix 42
AE6
C
234 250Right-handed alpha
Helix 43
AE7
C
251 255Right-handed 310
Helix 44
AE8
C
257 266Right-handed alpha
Helix 45
AE9
C
270 274Right-handed 310
Helix 46
AF1
D
10 22Right-handed alpha
Helix 47
AF2
D
33 54Right-handed alpha
Helix 48
AF3
D
58 68Right-handed alpha
Helix 49
AF4
D
74 79Right-handed 310
Helix 50
AF5
D
91 106Right-handed alpha
Helix 51
AF6
D
120 126Right-handed alpha
Helix 52
AF7
D
130 132Right-handed 310
Helix 53
AF8
D
158 172Right-handed alpha
Helix 54
AF9
D
186 204Right-handed alpha
Helix 55
AG1
D
208 221Right-handed alpha
Helix 56
AG2
D
225 234Right-handed alpha
Helix 57
AG3
D
234 250Right-handed alpha
Helix 58
AG4
D
251 255Right-handed 310
Helix 59
AG5
D
257 266Right-handed alpha
Helix 60
AG6
D
270 274Right-handed 310
Helix 61
AG7
E
10 23Right-handed alpha
Helix 62
AG8
E
33 54Right-handed alpha
Helix 63
AG9
E
58 68Right-handed alpha
Helix 64
AH1
E
74 79Right-handed 310
Helix 65
AH2
E
91 106Right-handed alpha
Helix 66
AH3
E
120 126Right-handed alpha
Helix 67
AH4
E
130 132Right-handed 310
Helix 68
AH5
E
158 172Right-handed alpha
Helix 69
AH6
E
186 204Right-handed alpha
Helix 70
AH7
E
208 221Right-handed alpha
Helix 71
AH8
E
225 234Right-handed alpha
Helix 72
AH9
E
234 250Right-handed alpha
Helix 73
AI1
E
251 255Right-handed 310
Helix 74
AI2
E
257 266Right-handed alpha
Helix 75
AI3
E
270 274Right-handed 310
Helix 76
AI4
F
10 22Right-handed alpha
Helix 77
AI5
F
33 54Right-handed alpha
Helix 78
AI6
F
58 68Right-handed alpha
Helix 79
AI7
F
74 79Right-handed 310
Helix 80
AI8
F
91 106Right-handed alpha
Helix 81
AI9
F
120 127Right-handed alpha
Helix 82
AJ1
F
130 132Right-handed 310
Helix 83
AJ2
F
158 172Right-handed alpha
Helix 84
AJ3
F
186 204Right-handed alpha
Helix 85
AJ4
F
208 220Right-handed alpha
Helix 86
AJ5
F
225 234Right-handed alpha
Helix 87
AJ6
F
234 250Right-handed alpha
Helix 88
AJ7
F
251 255Right-handed 310
Helix 89
AJ8
F
257 266Right-handed alpha
Helix 90
AJ9
F
270 274Right-handed 310
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There are 6 sheets in PDB entry 6AA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
26 30parallel
Strand 3
A
3 7parallel
Strand 4
A
83 86parallel
Strand 5
A
111 114parallel
Strand 6
A
134 139parallel
Strand 7
A
148 153anti-parallel
Strand 8
A
175 180parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 72first strand
Strand 2
B
26 30parallel
Strand 3
B
3 7parallel
Strand 4
B
83 86parallel
Strand 5
B
111 114parallel
Strand 6
B
134 138parallel
Strand 7
B
148 153anti-parallel
Strand 8
B
175 180parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 72first strand
Strand 2
C
26 30parallel
Strand 3
C
3 7parallel
Strand 4
C
83 86parallel
Strand 5
C
111 114parallel
Strand 6
C
134 138parallel
Strand 7
C
148 153anti-parallel
Strand 8
C
175 180parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 72first strand
Strand 2
D
26 30parallel
Strand 3
D
3 7parallel
Strand 4
D
83 86parallel
Strand 5
D
111 114parallel
Strand 6
D
134 139parallel
Strand 7
D
148 153anti-parallel
Strand 8
D
175 180parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
69 72first strand
Strand 2
E
26 30parallel
Strand 3
E
3 7parallel
Strand 4
E
83 86parallel
Strand 5
E
111 114parallel
Strand 6
E
134 139parallel
Strand 7
E
148 153anti-parallel
Strand 8
E
175 180parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
69 72first strand
Strand 2
F
26 30parallel
Strand 3
F
3 7parallel
Strand 4
F
83 86parallel
Strand 5
F
111 114parallel
Strand 6
F
134 139parallel
Strand 7
F
148 153anti-parallel
Strand 8
F
175 180parallel
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