Analysis of interatomic Contacts of Structural Units in PDB entry:
6AGF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AGF entry

There are 2 chains in PDB entry 6AGF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 119GLU 1607
B
GLY 20ALA 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 6AGF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
120 129Right-handed alpha
Helix 2
AA2
A
132 148Right-handed alpha
Helix 3
AA3
A
157 180Right-handed alpha
Helix 4
AA4
A
183 189Right-handed alpha
Helix 5
AA5
A
193 210Right-handed alpha
Helix 6
AA6
A
218 226Right-handed 310
Helix 7
AA7
A
227 233Right-handed alpha
Helix 8
AA8
A
235 244Right-handed alpha
Helix 9
AA9
A
244 249Right-handed alpha
Helix 10
AB1
A
250 273Right-handed alpha
Helix 11
AB2
A
274 278Right-handed 310
Helix 12
AB3
A
337 343Right-handed alpha
Helix 13
AB4
A
391 398Right-handed alpha
Helix 14
AB5
A
399 404Right-handed alpha
Helix 15
AB6
A
407 420Right-handed alpha
Helix 16
AB7
A
423 434Right-handed alpha
Helix 17
AB8
A
438 454Right-handed alpha
Helix 18
AB9
A
454 463Right-handed alpha
Helix 19
AC1
A
560 577Right-handed alpha
Helix 20
AC2
A
580 596Right-handed alpha
Helix 21
AC3
A
603 632Right-handed alpha
Helix 22
AC4
A
640 660Right-handed alpha
Helix 23
AC5
A
667 681Right-handed 310
Helix 24
AC6
A
685 698Right-handed alpha
Helix 25
AC7
A
702 727Right-handed alpha
Helix 26
AC8
A
729 733Right-handed 310
Helix 27
AC9
A
746 760Right-handed alpha
Helix 28
AD1
A
763 773Right-handed alpha
Helix 29
AD2
A
774 803Right-handed alpha
Helix 30
AD3
A
1015 1029Right-handed alpha
Helix 31
AD4
A
1030 1047Right-handed alpha
Helix 32
AD5
A
1052 1056Right-handed 310
Helix 33
AD6
A
1059 1079Right-handed alpha
Helix 34
AD7
A
1080 1088Right-handed alpha
Helix 35
AD8
A
1089 1094Right-handed alpha
Helix 36
AD9
A
1097 1117Right-handed alpha
Helix 37
AE1
A
1129 1142Right-handed 310
Helix 38
AE2
A
1143 1154Right-handed alpha
Helix 39
AE3
A
1156 1183Right-handed alpha
Helix 40
AE4
A
1205 1210Right-handed alpha
Helix 41
AE5
A
1211 1213Right-handed 310
Helix 42
AE6
A
1229 1242Right-handed alpha
Helix 43
AE7
A
1245 1256Right-handed alpha
Helix 44
AE8
A
1268 1270Right-handed 310
Helix 45
AE9
A
1271 1282Right-handed alpha
Helix 46
AF1
A
1283 1305Right-handed alpha
Helix 47
AF2
A
1315 1325Right-handed alpha
Helix 48
AF3
A
1346 1351Right-handed alpha
Helix 49
AF4
A
1353 1363Right-handed alpha
Helix 50
AF5
A
1364 1372Right-handed alpha
Helix 51
AF6
A
1378 1405Right-handed alpha
Helix 52
AF7
A
1414 1440Right-handed alpha
Helix 53
AF8
A
1446 1451Right-handed alpha
Helix 54
AF9
A
1452 1464Right-handed 310
Helix 55
AG1
A
1467 1504Right-handed alpha
Helix 56
AG2
A
1521 1532Right-handed alpha
Helix 57
AG3
A
1533 1535Right-handed 310
Helix 58
AG4
A
1537 1543Right-handed alpha
Helix 59
AG5
A
1570 1606Right-handed alpha
Helix 60
AG6
B
112 116Right-handed 310
Helix 61
AG7
B
154 191Right-handed alpha
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There are 5 sheets in PDB entry 6AGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
279 282first strand
Strand 2
A
373 376anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1188 1191first strand
Strand 2
A
1218 1221anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
29 31first strand
Strand 2
B
138 147parallel
Strand 3
B
117 123anti-parallel
Strand 4
B
57 60anti-parallel
Strand 5
B
68 72anti-parallel
Strand 6
B
80 81anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
36 38first strand
Strand 2
B
106 108anti-parallel
Strand 3
B
90 92anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
50 51first strand
Strand 2
B
126 128anti-parallel
Strand 3
B
133 135anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il