Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6AJ4 entry

There are 6 chains in PDB entry 6AJ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1805	ASN 2079
B	MET 1	GLU 178
C	GLU 1805	ASN 2079
D	MET 1	GLU 178
E	GLU 1805	ASN 2079
F	MET 1	PRO 50

There are 75 helices in PDB entry 6AJ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1818	1822	Right-handed 310
Helix 2	AA2	A	1838	1854	Right-handed alpha
Helix 3	AA3	A	1855	1857	Right-handed 310
Helix 4	AA4	A	1890	1900	Right-handed alpha
Helix 5	AA5	A	1960	1981	Right-handed alpha
Helix 6	AA6	A	1986	1999	Right-handed alpha
Helix 7	AA7	A	2004	2015	Right-handed alpha
Helix 8	AA8	A	2020	2052	Right-handed alpha
Helix 9	AA9	A	2053	2055	Right-handed 310
Helix 10	AB1	A	2056	2075	Right-handed alpha
Helix 11	AB2	B	15	25	Right-handed alpha
Helix 12	AB3	B	61	66	Right-handed 310
Helix 13	AB4	B	67	72	Right-handed 310
Helix 14	AB5	B	86	95	Right-handed alpha
Helix 15	AB6	B	96	105	Right-handed alpha
Helix 16	AB7	B	122	130	Right-handed alpha
Helix 17	AB8	B	131	133	Right-handed 310
Helix 18	AB9	B	138	149	Right-handed alpha
Helix 19	AC1	B	164	177	Right-handed alpha
Helix 20	AC2	C	1818	1825	Right-handed 310
Helix 21	AC3	C	1838	1855	Right-handed alpha
Helix 22	AC4	C	1890	1899	Right-handed alpha
Helix 23	AC5	C	1925	1929	Right-handed 310
Helix 24	AC6	C	1960	1981	Right-handed alpha
Helix 25	AC7	C	1986	1999	Right-handed alpha
Helix 26	AC8	C	2004	2014	Right-handed alpha
Helix 27	AC9	C	2020	2052	Right-handed alpha
Helix 28	AD1	C	2053	2055	Right-handed 310
Helix 29	AD2	C	2056	2078	Right-handed alpha
Helix 30	AD3	D	15	25	Right-handed alpha
Helix 31	AD4	D	61	65	Right-handed 310
Helix 32	AD5	D	67	72	Right-handed 310
Helix 33	AD6	D	86	96	Right-handed alpha
Helix 34	AD7	D	96	105	Right-handed alpha
Helix 35	AD8	D	116	120	Right-handed 310
Helix 36	AD9	D	125	131	Right-handed alpha
Helix 37	AE1	D	138	149	Right-handed alpha
Helix 38	AE2	D	164	177	Right-handed alpha
Helix 39	AE3	E	1818	1825	Right-handed 310
Helix 40	AE4	E	1838	1851	Right-handed alpha
Helix 41	AE5	E	1855	1857	Right-handed 310
Helix 42	AE6	E	1869	1873	Right-handed 310
Helix 43	AE7	E	1890	1900	Right-handed alpha
Helix 44	AE8	E	1960	1981	Right-handed alpha
Helix 45	AE9	E	1986	1999	Right-handed alpha
Helix 46	AF1	E	2005	2014	Right-handed alpha
Helix 47	AF2	E	2021	2052	Right-handed alpha
Helix 48	AF3	E	2056	2075	Right-handed alpha
Helix 49	AF4	E	2076	2078	Right-handed 310
Helix 50	AF5	F	15	24	Right-handed alpha
Helix 51	AF6	F	62	66	Right-handed 310
Helix 52	AF7	F	67	71	Right-handed 310
Helix 53	AF8	F	86	96	Right-handed alpha
Helix 54	AF9	F	96	105	Right-handed alpha
Helix 55	AG1	F	116	121	Right-handed alpha
Helix 56	AG2	F	122	130	Right-handed alpha
Helix 57	AG3	F	131	133	Right-handed 310
Helix 58	AG4	F	138	149	Right-handed alpha
Helix 59	AG5	F	164	178	Right-handed alpha
Helix 60	AG6	G	1818	1825	Right-handed 310
Helix 61	AG7	G	1838	1855	Right-handed alpha
Helix 62	AG8	G	1890	1900	Right-handed alpha
Helix 63	AG9	G	1960	1981	Right-handed alpha
Helix 64	AH1	G	1986	1996	Right-handed alpha
Helix 65	AH2	G	2005	2015	Right-handed alpha
Helix 66	AH3	G	2020	2049	Right-handed alpha
Helix 67	AH4	G	2056	2079	Right-handed alpha
Helix 68	AH5	H	15	26	Right-handed alpha
Helix 69	AH6	H	61	72	Right-handed 310
Helix 70	AH7	H	86	96	Right-handed alpha
Helix 71	AH8	H	96	105	Right-handed alpha
Helix 72	AH9	H	125	130	Right-handed alpha
Helix 73	AI1	H	131	133	Right-handed 310
Helix 74	AI2	H	138	149	Right-handed alpha
Helix 75	AI3	H	164	178	Right-handed alpha

There are 9 sheets in PDB entry 6AJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1859	1861	first strand
Strand 2	A	1878	1887	parallel
Strand 3	A	1907	1916	anti-parallel
Strand 4	A	1930	1942	anti-parallel
Strand 5	A	1948	1959	anti-parallel
Strand 6	A	1827	1833	anti-parallel
Strand 7	A	1810	1817	anti-parallel
Strand 8	A	1878	1887	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	45	first strand
Strand 2	B	50	57	anti-parallel
Strand 3	B	4	10	parallel
Strand 4	B	77	83	parallel
Strand 5	B	110	115	parallel
Strand 6	B	154	157	parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1859	1862	first strand
Strand 2	C	1878	1887	parallel
Strand 3	C	1907	1916	anti-parallel
Strand 4	C	1930	1942	anti-parallel
Strand 5	C	1948	1959	anti-parallel
Strand 6	C	1828	1833	anti-parallel
Strand 7	C	1810	1817	anti-parallel
Strand 8	C	1878	1887	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	46	first strand
Strand 2	D	49	57	anti-parallel
Strand 3	D	4	10	parallel
Strand 4	D	77	83	parallel
Strand 5	D	110	115	parallel
Strand 6	D	153	156	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1828	1833	first strand
Strand 2	E	1810	1817	anti-parallel
Strand 3	E	1878	1887	anti-parallel
Strand 4	E	1859	1862	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1828	1833	first strand
Strand 2	E	1810	1817	anti-parallel
Strand 3	E	1878	1887	anti-parallel
Strand 4	E	1907	1917	anti-parallel
Strand 5	E	1929	1942	anti-parallel
Strand 6	E	1951	1959	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	45	first strand
Strand 2	F	50	57	anti-parallel
Strand 3	F	3	10	parallel
Strand 4	F	77	83	parallel
Strand 5	F	110	115	parallel
Strand 6	F	153	156	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1859	1862	first strand
Strand 2	G	1878	1887	parallel
Strand 3	G	1907	1916	anti-parallel
Strand 4	G	1930	1942	anti-parallel
Strand 5	G	1948	1959	anti-parallel
Strand 6	G	1827	1833	anti-parallel
Strand 7	G	1810	1817	anti-parallel
Strand 8	G	1878	1887	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	40	46	first strand
Strand 2	H	49	57	anti-parallel
Strand 3	H	4	10	parallel
Strand 4	H	77	83	parallel
Strand 5	H	110	115	parallel
Strand 6	H	154	156	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6AJ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6AJ4