Analysis of interatomic Contacts of Structural Units in PDB entry:
6AK7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6AK7 entry

There is 1 chain in PDB entry 6AK7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 90TRP 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 6AK7. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
132 150Right-handed alpha
Helix 2
AA2
A
151 153Right-handed 310
Helix 3
AA3
A
155 177Right-handed alpha
Helix 4
AA4
A
180 185Right-handed 310
Helix 5
AA5
A
230 240Right-handed alpha
Helix 6
AA6
A
269 273Right-handed 310
Helix 7
AA7
A
297 302Right-handed alpha
Helix 8
AA8
A
305 316Right-handed alpha
Helix 9
AA9
A
318 334Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6AK7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
96 100first strand
Strand 2
A
339 346anti-parallel
Strand 3
A
291 296anti-parallel
Strand 4
A
210 215anti-parallel
Strand 5
A
218 221anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
109 115first strand
Strand 2
A
120 129anti-parallel
Strand 3
A
187 188anti-parallel
Strand 4
A
264 265anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
109 115first strand
Strand 2
A
120 129anti-parallel
Strand 3
A
190 196anti-parallel
Strand 4
A
200 206anti-parallel
Strand 5
A
279 284anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
244 245first strand
Strand 2
A
253 254anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il