Analysis of interatomic Contacts of Structural Units in PDB entry:
6ALH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6ALH entry

There are 8 chains in PDB entry 6ALH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	G 1	C 29
B	G 1	C 29
R	C 11	A 20
G	GLU 7	LEU 234
H	SER 4	VAL 232
I	VAL 2	GLU 1342
J	GLU 16	ARG 1373
K	ALA 2	GLU 74

There are 99 helices in PDB entry 6ALH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	34	50	Right-handed alpha
Helix 2	AA2	G	77	87	Right-handed alpha
Helix 3	AA3	G	113	115	Right-handed 310
Helix 4	AA4	G	154	159	Right-handed alpha
Helix 5	AA5	G	212	230	Right-handed alpha
Helix 6	AA6	H	34	50	Right-handed alpha
Helix 7	AA7	H	77	87	Right-handed alpha
Helix 8	AA8	H	113	115	Right-handed 310
Helix 9	AA9	H	212	230	Right-handed alpha
Helix 10	AB1	I	6	10	Right-handed 310
Helix 11	AB2	I	28	39	Right-handed alpha
Helix 12	AB3	I	48	57	Right-handed alpha
Helix 13	AB4	I	81	89	Right-handed alpha
Helix 14	AB5	I	206	213	Right-handed alpha
Helix 15	AB6	I	216	225	Right-handed alpha
Helix 16	AB7	I	242	247	Right-handed 310
Helix 17	AB8	I	270	280	Right-handed alpha
Helix 18	AB9	I	291	294	Right-handed 310
Helix 19	AC1	I	318	327	Right-handed alpha
Helix 20	AC2	I	345	354	Right-handed alpha
Helix 21	AC3	I	358	371	Right-handed alpha
Helix 22	AC4	I	377	387	Right-handed alpha
Helix 23	AC5	I	398	409	Right-handed alpha
Helix 24	AC6	I	421	437	Right-handed alpha
Helix 25	AC7	I	447	449	Right-handed 310
Helix 26	AC8	I	455	481	Right-handed alpha
Helix 27	AC9	I	495	508	Right-handed alpha
Helix 28	AD1	I	519	527	Right-handed alpha
Helix 29	AD2	I	544	549	Right-handed alpha
Helix 30	AD3	I	608	612	Right-handed 310
Helix 31	AD4	I	670	674	Right-handed 310
Helix 32	AD5	I	675	688	Right-handed alpha
Helix 33	AD6	I	704	712	Right-handed alpha
Helix 34	AD7	I	820	825	Right-handed alpha
Helix 35	AD8	I	858	864	Right-handed alpha
Helix 36	AD9	I	942	979	Right-handed alpha
Helix 37	AE1	I	985	990	Right-handed alpha
Helix 38	AE2	I	1005	1038	Right-handed alpha
Helix 39	AE3	I	1099	1103	Right-handed 310
Helix 40	AE4	I	1109	1134	Right-handed alpha
Helix 41	AE5	I	1138	1151	Right-handed alpha
Helix 42	AE6	I	1169	1177	Right-handed alpha
Helix 43	AE7	I	1191	1202	Right-handed alpha
Helix 44	AE8	I	1238	1243	Right-handed alpha
Helix 45	AE9	I	1271	1281	Right-handed alpha
Helix 46	AF1	I	1284	1292	Right-handed alpha
Helix 47	AF2	I	1297	1310	Right-handed alpha
Helix 48	AF3	I	1320	1333	Right-handed alpha
Helix 49	AF4	J	26	34	Right-handed alpha
Helix 50	AF5	J	77	81	Right-handed 310
Helix 51	AF6	J	96	101	Right-handed alpha
Helix 52	AF7	J	113	118	Right-handed alpha
Helix 53	AF8	J	122	128	Right-handed alpha
Helix 54	AF9	J	131	140	Right-handed alpha
Helix 55	AG1	J	161	171	Right-handed alpha
Helix 56	AG2	J	181	191	Right-handed alpha
Helix 57	AG3	J	194	208	Right-handed alpha
Helix 58	AG4	J	210	230	Right-handed alpha
Helix 59	AG5	J	233	236	Right-handed 310
Helix 60	AG6	J	263	282	Right-handed alpha
Helix 61	AG7	J	288	309	Right-handed alpha
Helix 62	AG8	J	326	332	Right-handed alpha
Helix 63	AG9	J	336	341	Right-handed alpha
Helix 64	AH1	J	370	377	Right-handed alpha
Helix 65	AH2	J	377	389	Right-handed alpha
Helix 66	AH3	J	394	404	Right-handed alpha
Helix 67	AH4	J	407	417	Right-handed alpha
Helix 68	AH5	J	430	432	Right-handed 310
Helix 69	AH6	J	450	458	Right-handed alpha
Helix 70	AH7	J	473	483	Right-handed alpha
Helix 71	AH8	J	504	514	Right-handed alpha
Helix 72	AH9	J	529	540	Right-handed alpha
Helix 73	AI1	J	574	581	Right-handed alpha
Helix 74	AI2	J	597	613	Right-handed alpha
Helix 75	AI3	J	614	636	Right-handed alpha
Helix 76	AI4	J	640	644	Right-handed 310
Helix 77	AI5	J	648	670	Right-handed alpha
Helix 78	AI6	J	674	703	Right-handed alpha
Helix 79	AI7	J	720	728	Right-handed alpha
Helix 80	AI8	J	733	742	Right-handed alpha
Helix 81	AI9	J	769	802	Right-handed alpha
Helix 82	AJ1	J	834	840	Right-handed alpha
Helix 83	AJ2	J	865	875	Right-handed alpha
Helix 84	AJ3	J	915	925	Right-handed alpha
Helix 85	AJ4	J	926	928	Right-handed 310
Helix 86	AJ5	J	1137	1147	Right-handed alpha
Helix 87	AJ6	J	1216	1224	Right-handed alpha
Helix 88	AJ7	J	1225	1244	Right-handed alpha
Helix 89	AJ8	J	1249	1261	Right-handed alpha
Helix 90	AJ9	J	1282	1295	Right-handed alpha
Helix 91	AK1	J	1308	1315	Right-handed alpha
Helix 92	AK2	J	1319	1325	Right-handed alpha
Helix 93	AK3	J	1328	1339	Right-handed alpha
Helix 94	AK4	J	1346	1353	Right-handed alpha
Helix 95	AK5	J	1360	1373	Right-handed alpha
Helix 96	AK6	K	6	13	Right-handed alpha
Helix 97	AK7	K	17	32	Right-handed alpha
Helix 98	AK8	K	45	56	Right-handed alpha
Helix 99	AK9	K	60	74	Right-handed alpha

There are 47 sheets in PDB entry 6ALH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	17	first strand
Strand 2	G	24	31	anti-parallel
Strand 3	G	199	207	anti-parallel
Strand 4	G	180	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	104	first strand
Strand 2	G	140	147	anti-parallel
Strand 3	G	56	61	anti-parallel
Strand 4	G	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	90	91	first strand
Strand 2	G	122	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	109	111	first strand
Strand 2	G	129	132	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	16	18	first strand
Strand 2	H	23	31	anti-parallel
Strand 3	H	199	207	anti-parallel
Strand 4	H	180	189	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	101	first strand
Strand 2	H	142	149	anti-parallel
Strand 3	H	53	61	anti-parallel
Strand 4	H	171	172	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	90	91	first strand
Strand 2	H	122	123	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	105	first strand
Strand 2	H	139	140	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	111	first strand
Strand 2	H	129	133	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	152	153	first strand
Strand 2	H	175	176	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	13	14	first strand
Strand 2	I	1182	1183	parallel
Strand 3	I	700	701	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	60	first strand
Strand 2	I	66	74	anti-parallel
Strand 3	I	94	104	anti-parallel
Strand 4	I	119	127	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	143	145	first strand
Strand 2	I	512	514	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	451	453	first strand
Strand 2	I	147	151	anti-parallel
Strand 3	I	530	531	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	154	158	first strand
Strand 2	I	173	177	anti-parallel
Strand 3	I	184	187	anti-parallel
Strand 4	I	195	197	anti-parallel
Strand 5	I	204	205	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	180	181	first strand
Strand 2	I	395	396	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	284	285	first strand
Strand 2	I	238	240	anti-parallel
Strand 3	I	227	231	anti-parallel
Strand 4	I	332	336	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	255	257	first strand
Strand 2	I	260	263	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	296	297	first strand
Strand 2	I	315	316	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	599	606	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	580	581	first strand
Strand 2	I	587	594	anti-parallel
Strand 3	I	652	653	anti-parallel
Strand 4	I	616	617	parallel
Strand 5	I	634	637	anti-parallel
Strand 6	I	642	645	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	623	624	first strand
Strand 2	I	628	629	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	749	752	first strand
Strand 2	I	731	736	anti-parallel
Strand 3	I	722	727	anti-parallel
Strand 4	I	776	777	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	757	758	first strand
Strand 2	I	764	765	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	768	769	first strand
Strand 2	I	784	785	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	789	790	first strand
Strand 2	I	793	794	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1066	1067	first strand
Strand 2	I	1225	1234	anti-parallel
Strand 3	I	798	804	anti-parallel
Strand 4	I	1096	1098	parallel
Strand 5	I	816	819	anti-parallel
Strand 6	I	1076	1080	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1066	1067	first strand
Strand 2	I	1225	1234	anti-parallel
Strand 3	I	1209	1210	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	846	847	first strand
Strand 2	I	830	843	anti-parallel
Strand 3	I	1046	1058	anti-parallel
Strand 4	I	928	935	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	882	884	first strand
Strand 2	I	918	919	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	887	888	first strand
Strand 2	I	914	915	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	356	anti-parallel
Strand 3	J	465	469	anti-parallel
Strand 4	J	421	425	anti-parallel
Strand 5	J	434	442	anti-parallel
Strand 6	J	365	369	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1244	1246	first strand
Strand 2	J	350	356	anti-parallel
Strand 3	J	447	448	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1269	1270	first strand
Strand 2	J	345	346	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1335	1337	first strand
Strand 2	J	22	24	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	103	112	first strand
Strand 2	J	238	244	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	159	160	first strand
Strand 2	J	144	147	anti-parallel
Strand 3	J	177	179	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	526	527	first strand
Strand 2	J	547	556	parallel
Strand 3	J	564	573	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	706	707	first strand
Strand 2	J	714	715	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	820	822	first strand
Strand 2	J	880	882	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	825	826	first strand
Strand 2	J	831	833	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	957	961	first strand
Strand 2	J	981	985	anti-parallel
Strand 3	J	991	996	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	965	967	first strand
Strand 2	J	973	975	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1098	1100	first strand
Strand 2	J	1077	1081	anti-parallel
Strand 3	J	1033	1035	anti-parallel
Strand 4	J	1114	1115	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1046	1049	first strand
Strand 2	J	1058	1061	anti-parallel
Strand 3	J	1105	1107	anti-parallel
Strand 4	J	1122	1123	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1187	1190	first strand
Strand 2	J	1173	1178	anti-parallel
Strand 3	J	1161	1165	anti-parallel
Strand 4	J	1203	1204	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1279	1281	first strand
Strand 2	J	1263	1268	anti-parallel
Strand 3	J	1301	1303	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6ALH

Analysis of interatomic Contacts of Structural Units in PDB entry:
6ALH