Analysis of interatomic Contacts of Structural Units in PDB entry:
6B4J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6B4J entry

There are 6 chains in PDB entry 6B4J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
ASP 384SER 698
C
ILE 379ASN 422
A
ASP 384SER 698
D
VAL 385ASN 422
E
GLU 54ASN 479
F
GLU 54ASN 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 6B4J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
384 404Right-handed alpha
Helix 2
AA2
B
412 433Right-handed alpha
Helix 3
AA3
B
437 454Right-handed alpha
Helix 4
AA4
B
465 468Right-handed 310
Helix 5
AA5
B
469 495Right-handed alpha
Helix 6
AA6
B
498 513Right-handed alpha
Helix 7
AA7
B
513 528Right-handed alpha
Helix 8
AA8
B
529 532Right-handed 310
Helix 9
AA9
B
543 551Right-handed alpha
Helix 10
AB1
B
563 581Right-handed alpha
Helix 11
AB2
B
598 610Right-handed alpha
Helix 12
AB3
B
615 637Right-handed alpha
Helix 13
AB4
B
637 649Right-handed alpha
Helix 14
AB5
B
653 658Right-handed alpha
Helix 15
AB6
B
661 664Right-handed 310
Helix 16
AB7
B
665 682Right-handed alpha
Helix 17
AB8
B
692 698Right-handed alpha
Helix 18
AB9
C
394 402Right-handed alpha
Helix 19
AC1
C
417 421Right-handed 310
Helix 20
AC2
A
385 404Right-handed alpha
Helix 21
AC3
A
412 433Right-handed alpha
Helix 22
AC4
A
437 454Right-handed alpha
Helix 23
AC5
A
465 470Right-handed 310
Helix 24
AC6
A
471 495Right-handed alpha
Helix 25
AC7
A
498 513Right-handed alpha
Helix 26
AC8
A
513 528Right-handed alpha
Helix 27
AC9
A
529 532Right-handed 310
Helix 28
AD1
A
543 551Right-handed alpha
Helix 29
AD2
A
563 581Right-handed alpha
Helix 30
AD3
A
598 610Right-handed alpha
Helix 31
AD4
A
616 637Right-handed alpha
Helix 32
AD5
A
637 649Right-handed alpha
Helix 33
AD6
A
653 658Right-handed alpha
Helix 34
AD7
A
661 664Right-handed 310
Helix 35
AD8
A
665 682Right-handed alpha
Helix 36
AD9
A
692 698Right-handed alpha
Helix 37
AE1
D
394 402Right-handed alpha
Helix 38
AE2
E
55 67Right-handed alpha
Helix 39
AE3
E
93 98Right-handed 310
Helix 40
AE4
E
100 110Right-handed alpha
Helix 41
AE5
E
118 128Right-handed alpha
Helix 42
AE6
E
143 156Right-handed alpha
Helix 43
AE7
E
171 186Right-handed alpha
Helix 44
AE8
E
217 226Right-handed alpha
Helix 45
AE9
E
232 236Right-handed 310
Helix 46
AF1
E
243 248Right-handed alpha
Helix 47
AF2
E
250 263Right-handed alpha
Helix 48
AF3
E
278 287Right-handed alpha
Helix 49
AF4
E
316 329Right-handed alpha
Helix 50
AF5
E
342 356Right-handed alpha
Helix 51
AF6
E
368 381Right-handed alpha
Helix 52
AF7
E
419 429Right-handed alpha
Helix 53
AF8
E
445 460Right-handed alpha
Helix 54
AF9
E
470 479Right-handed alpha
Helix 55
AG1
F
55 67Right-handed alpha
Helix 56
AG2
F
93 98Right-handed alpha
Helix 57
AG3
F
100 110Right-handed alpha
Helix 58
AG4
F
118 128Right-handed alpha
Helix 59
AG5
F
143 156Right-handed alpha
Helix 60
AG6
F
171 186Right-handed alpha
Helix 61
AG7
F
217 226Right-handed alpha
Helix 62
AG8
F
232 236Right-handed 310
Helix 63
AG9
F
243 248Right-handed alpha
Helix 64
AH1
F
250 263Right-handed alpha
Helix 65
AH2
F
278 289Right-handed alpha
Helix 66
AH3
F
316 329Right-handed alpha
Helix 67
AH4
F
342 356Right-handed alpha
Helix 68
AH5
F
368 382Right-handed alpha
Helix 69
AH6
F
419 429Right-handed alpha
Helix 70
AH7
F
445 460Right-handed alpha
Helix 71
AH8
F
470 476Right-handed alpha
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There are 6 sheets in PDB entry 6B4J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
457 458first strand
Strand 2
A
463 464anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
78 80first strand
Strand 2
E
293 297anti-parallel
Strand 3
E
134 138parallel
Strand 4
E
269 274parallel
Strand 5
E
238 241parallel
Strand 6
E
165 168parallel
Strand 7
E
213 216parallel
Strand 8
E
194 197parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
360 363first strand
Strand 2
E
386 389parallel
Strand 3
E
335 339parallel
Strand 4
E
402 407parallel
Strand 5
E
437 443parallel
Strand 6
E
307 313parallel
Strand 7
E
464 465parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
78 80first strand
Strand 2
F
294 296anti-parallel
Strand 3
F
134 137parallel
Strand 4
F
269 274parallel
Strand 5
F
238 241parallel
Strand 6
F
165 168parallel
Strand 7
F
213 216parallel
Strand 8
F
194 196parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
360 363first strand
Strand 2
F
386 389parallel
Strand 3
F
335 339parallel
Strand 4
F
402 407parallel
Strand 5
F
437 443parallel
Strand 6
F
307 313parallel
Strand 7
F
464 465parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
412 413first strand
Strand 2
F
417 418anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il