Analysis of interatomic Contacts of Structural Units in PDB entry:
6BDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BDZ entry

There are 3 chains in PDB entry 6BDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLN 23CYS 237
H
 GLN 20CYS 238
A
 ASN 220LEU 647
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6BDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
L
52 54Right-handed 310
Helix 2
AA2
L
144 151Right-handed alpha
Helix 3
AA3
L
206 210Right-handed alpha
Helix 4
AA4
H
105 109Right-handed 310
Helix 5
AA5
H
118 122Right-handed 310
Helix 6
AA6
H
179 181Right-handed 310
Helix 7
AA7
H
223 226Right-handed 310
Helix 8
AA8
A
229 237Right-handed alpha
Helix 9
AA9
A
238 259Right-handed alpha
Helix 10
AB1
A
279 283Right-handed 310
Helix 11
AB2
A
296 306Right-handed alpha
Helix 12
AB3
A
323 327Right-handed 310
Helix 13
AB4
A
373 389Right-handed alpha
Helix 14
AB5
A
400 404Right-handed 310
Helix 15
AB6
A
406 413Right-handed alpha
Helix 16
AB7
A
433 452Right-handed alpha
Helix 17
AB8
A
570 576Right-handed 310
Helix 18
AB9
A
603 607Right-handed 310
Helix 19
AC1
A
615 620Right-handed alpha
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There are 16 sheets in PDB entry 6BDZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
26 29first strand
Strand 2
L
41 51anti-parallel
Strand 3
L
85 98anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
32 35first strand
Strand 2
L
125 129parallel
Strand 3
L
108 113anti-parallel
Strand 4
L
56 61anti-parallel
Strand 5
L
68 72anti-parallel
Strand 6
L
76 77anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
32 35first strand
Strand 2
L
125 129parallel
Strand 3
L
108 113anti-parallel
Strand 4
L
120 121anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
137 141first strand
Strand 2
L
152 162anti-parallel
Strand 3
L
196 205anti-parallel
Strand 4
L
182 186anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
176 178first strand
Strand 2
L
167 173anti-parallel
Strand 3
L
214 221anti-parallel
Strand 4
L
228 233anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
22 26first strand
Strand 2
H
37 44anti-parallel
Strand 3
H
96 101anti-parallel
Strand 4
H
87 91anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
30 31first strand
Strand 2
H
130 134parallel
Strand 3
H
110 117anti-parallel
Strand 4
H
52 58anti-parallel
Strand 5
H
65 70anti-parallel
Strand 6
H
76 78anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
143 147first strand
Strand 2
H
158 168anti-parallel
Strand 3
H
198 207anti-parallel
Strand 4
H
186 188anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
143 147first strand
Strand 2
H
158 168anti-parallel
Strand 3
H
198 207anti-parallel
Strand 4
H
192 193anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
174 177first strand
Strand 2
H
217 222anti-parallel
Strand 3
H
227 232anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 277first strand
Strand 2
A
223 228parallel
Strand 3
A
314 319parallel
Strand 4
A
360 364parallel
Strand 5
A
329 331anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 367first strand
Strand 2
A
370 371anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 523first strand
Strand 2
A
535 536anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
553 555first strand
Strand 2
A
560 562anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
597 598first strand
Strand 2
A
608 609anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 632first strand
Strand 2
A
637 639anti-parallel
Strand 3
A
645 646anti-parallel
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