Analysis of interatomic Contacts of Structural Units in PDB entry:
6BFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6BFN entry

There are 2 chains in PDB entry 6BFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 193ALA 526
B
 ARG 194ALA 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 6BFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
201 210Right-handed alpha
Helix 2
AA2
A
249 266Right-handed alpha
Helix 3
AA3
A
295 302Right-handed alpha
Helix 4
AA4
A
311 332Right-handed alpha
Helix 5
AA5
A
358 362Right-handed 310
Helix 6
AA6
A
387 391Right-handed 310
Helix 7
AA7
A
392 398Right-handed alpha
Helix 8
AA8
A
402 420Right-handed alpha
Helix 9
AA9
A
436 446Right-handed alpha
Helix 10
AB1
A
463 465Right-handed 310
Helix 11
AB2
A
466 477Right-handed alpha
Helix 12
AB3
A
486 501Right-handed alpha
Helix 13
AB4
A
504 508Right-handed 310
Helix 14
AB5
A
510 522Right-handed alpha
Helix 15
AB6
A
523 525Right-handed 310
Helix 16
AB7
B
201 209Right-handed alpha
Helix 17
AB8
B
213 215Right-handed 310
Helix 18
AB9
B
250 266Right-handed alpha
Helix 19
AC1
B
279 283Right-handed 310
Helix 20
AC2
B
295 301Right-handed alpha
Helix 21
AC3
B
311 332Right-handed alpha
Helix 22
AC4
B
387 391Right-handed 310
Helix 23
AC5
B
392 397Right-handed alpha
Helix 24
AC6
B
402 420Right-handed alpha
Helix 25
AC7
B
436 446Right-handed alpha
Helix 26
AC8
B
465 477Right-handed alpha
Helix 27
AC9
B
486 501Right-handed alpha
Helix 28
AD1
B
504 508Right-handed 310
Helix 29
AD2
B
510 526Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6BFN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
224 231anti-parallel
Strand 3
A
234 241anti-parallel
Strand 4
A
283 289anti-parallel
Strand 5
A
274 280anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 337first strand
Strand 2
A
363 364anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 348first strand
Strand 2
A
354 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
430 433anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
224 231anti-parallel
Strand 3
B
234 241anti-parallel
Strand 4
B
285 289anti-parallel
Strand 5
B
274 278anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 337first strand
Strand 2
B
363 364anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
346 348first strand
Strand 2
B
354 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 427first strand
Strand 2
B
430 433anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il