Analysis of interatomic Contacts of Structural Units in PDB entry:
6C04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6C04 entry

There are 11 chains in PDB entry 6C04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 226
B	MET 1	SER 237
C	ASN 30	SER 1140
D	GLY -1	ALA 1282
E	GLY 27	GLY 109
F	SER 209	LEU 527
J	ARG 4	GLY 111
O	G 1	T 31
P	A 1	C 26
G	A 1	T 18
H	A 9	C 30

There are113 helices in PDB entry 6C04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	43	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	203	220	Right-handed alpha
Helix 5	AA5	B	30	45	Right-handed alpha
Helix 6	AA6	B	72	77	Right-handed alpha
Helix 7	AA7	B	108	110	Right-handed 310
Helix 8	AA8	B	205	217	Right-handed alpha
Helix 9	AA9	B	219	224	Right-handed alpha
Helix 10	AB1	C	54	66	Right-handed alpha
Helix 11	AB2	C	67	76	Right-handed alpha
Helix 12	AB3	C	84	94	Right-handed alpha
Helix 13	AB4	C	118	125	Right-handed alpha
Helix 14	AB5	C	233	241	Right-handed alpha
Helix 15	AB6	C	246	252	Right-handed alpha
Helix 16	AB7	C	257	264	Right-handed alpha
Helix 17	AB8	C	270	282	Right-handed alpha
Helix 18	AB9	C	289	294	Right-handed alpha
Helix 19	AC1	C	295	299	Right-handed 310
Helix 20	AC2	C	311	321	Right-handed alpha
Helix 21	AC3	C	334	347	Right-handed alpha
Helix 22	AC4	C	380	401	Right-handed alpha
Helix 23	AC5	C	413	418	Right-handed alpha
Helix 24	AC6	C	420	432	Right-handed alpha
Helix 25	AC7	C	444	452	Right-handed alpha
Helix 26	AC8	C	476	480	Right-handed 310
Helix 27	AC9	C	532	537	Right-handed alpha
Helix 28	AD1	C	590	594	Right-handed 310
Helix 29	AD2	C	596	600	Right-handed 310
Helix 30	AD3	C	601	611	Right-handed alpha
Helix 31	AD4	C	632	637	Right-handed alpha
Helix 32	AD5	C	739	744	Right-handed alpha
Helix 33	AD6	C	815	826	Right-handed alpha
Helix 34	AD7	C	928	943	Right-handed alpha
Helix 35	AD8	C	954	958	Right-handed 310
Helix 36	AD9	C	981	989	Right-handed alpha
Helix 37	AE1	C	1036	1040	Right-handed 310
Helix 38	AE2	C	1069	1080	Right-handed alpha
Helix 39	AE3	C	1081	1090	Right-handed alpha
Helix 40	AE4	C	1095	1109	Right-handed alpha
Helix 41	AE5	C	1120	1130	Right-handed alpha
Helix 42	AE6	D	16	24	Right-handed alpha
Helix 43	AE7	D	48	53	Right-handed alpha
Helix 44	AE8	D	104	107	Right-handed 310
Helix 45	AE9	D	112	119	Right-handed alpha
Helix 46	AF1	D	121	130	Right-handed alpha
Helix 47	AF2	D	140	147	Right-handed alpha
Helix 48	AF3	D	147	184	Right-handed alpha
Helix 49	AF4	D	190	228	Right-handed alpha
Helix 50	AF5	D	239	247	Right-handed alpha
Helix 51	AF6	D	257	267	Right-handed alpha
Helix 52	AF7	D	269	284	Right-handed alpha
Helix 53	AF8	D	286	305	Right-handed alpha
Helix 54	AF9	D	308	311	Right-handed 310
Helix 55	AG1	D	340	361	Right-handed alpha
Helix 56	AG2	D	363	383	Right-handed alpha
Helix 57	AG3	D	402	406	Right-handed 310
Helix 58	AG4	D	407	410	Right-handed 310
Helix 59	AG5	D	411	416	Right-handed alpha
Helix 60	AG6	D	445	452	Right-handed alpha
Helix 61	AG7	D	452	463	Right-handed alpha
Helix 62	AG8	D	468	478	Right-handed alpha
Helix 63	AG9	D	482	492	Right-handed alpha
Helix 64	AH1	D	505	507	Right-handed 310
Helix 65	AH2	D	528	533	Right-handed alpha
Helix 66	AH3	D	548	558	Right-handed alpha
Helix 67	AH4	D	578	589	Right-handed alpha
Helix 68	AH5	D	614	624	Right-handed alpha
Helix 69	AH6	D	643	651	Right-handed alpha
Helix 70	AH7	D	668	675	Right-handed alpha
Helix 71	AH8	D	689	704	Right-handed alpha
Helix 72	AH9	D	705	725	Right-handed alpha
Helix 73	AI1	D	741	763	Right-handed alpha
Helix 74	AI2	D	766	793	Right-handed alpha
Helix 75	AI3	D	797	805	Right-handed alpha
Helix 76	AI4	D	810	818	Right-handed alpha
Helix 77	AI5	D	845	881	Right-handed alpha
Helix 78	AI6	D	945	955	Right-handed alpha
Helix 79	AI7	D	976	980	Right-handed alpha
Helix 80	AI8	D	994	1005	Right-handed alpha
Helix 81	AI9	D	1006	1010	Right-handed 310
Helix 82	AJ1	D	1027	1036	Right-handed alpha
Helix 83	AJ2	D	1117	1126	Right-handed alpha
Helix 84	AJ3	D	1126	1144	Right-handed alpha
Helix 85	AJ4	D	1150	1160	Right-handed alpha
Helix 86	AJ5	D	1183	1192	Right-handed alpha
Helix 87	AJ6	D	1193	1195	Right-handed 310
Helix 88	AJ7	D	1209	1216	Right-handed alpha
Helix 89	AJ8	D	1220	1225	Right-handed alpha
Helix 90	AJ9	D	1228	1237	Right-handed alpha
Helix 91	AK1	D	1249	1255	Right-handed alpha
Helix 92	AK2	D	1264	1269	Right-handed alpha
Helix 93	AK3	D	1275	1281	Right-handed alpha
Helix 94	AK4	E	33	37	Right-handed 310
Helix 95	AK5	E	49	70	Right-handed alpha
Helix 96	AK6	E	90	101	Right-handed alpha
Helix 97	AK7	F	226	236	Right-handed alpha
Helix 98	AK8	F	244	266	Right-handed alpha
Helix 99	AK9	F	274	308	Right-handed alpha
Helix 100	AL1	F	316	334	Right-handed alpha
Helix 101	AL2	F	336	340	Right-handed 310
Helix 102	AL3	F	342	362	Right-handed alpha
Helix 103	AL4	F	369	391	Right-handed alpha
Helix 104	AL5	F	395	404	Right-handed alpha
Helix 105	AL6	F	406	415	Right-handed alpha
Helix 106	AL7	F	434	438	Right-handed 310
Helix 107	AL8	F	449	465	Right-handed alpha
Helix 108	AL9	F	468	479	Right-handed alpha
Helix 109	AM1	F	488	497	Right-handed alpha
Helix 110	AM2	F	499	515	Right-handed alpha
Helix 111	AM3	F	516	525	Right-handed alpha
Helix 112	AM4	J	81	87	Right-handed alpha
Helix 113	AM5	J	90	111	Right-handed alpha

There are 41 sheets in PDB entry 6C04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	13	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	178	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	143	anti-parallel
Strand 3	A	48	56	anti-parallel
Strand 4	A	162	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	12	first strand
Strand 2	B	20	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	179	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	99	first strand
Strand 2	B	134	143	anti-parallel
Strand 3	B	48	56	anti-parallel
Strand 4	B	161	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	151	158	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	191	first strand
Strand 2	C	198	205	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	363	364	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	523	531	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	578	580	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	542	first strand
Strand 2	C	558	562	anti-parallel
Strand 3	C	568	572	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	548	549	first strand
Strand 2	C	553	554	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	701	703	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	648	654	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	667	671	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1007	1008	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	884	886	anti-parallel
Strand 4	C	892	899	anti-parallel
Strand 5	C	735	738	parallel
Strand 6	C	915	916	anti-parallel
Strand 7	C	717	722	parallel
Strand 8	C	1023	1032	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	765	766	first strand
Strand 2	C	749	762	anti-parallel
Strand 3	C	865	877	anti-parallel
Strand 4	C	846	854	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	806	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	C	837	838	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	522	524	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1067	1068	first strand
Strand 2	D	420	421	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1136	1138	first strand
Strand 2	D	9	11	anti-parallel
Strand 3	D	1242	1243	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	102	first strand
Strand 2	D	313	318	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	252	255	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	337	first strand
Strand 2	D	327	330	anti-parallel
Strand 3	J	8	9	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	632	637	first strand
Strand 2	D	662	667	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	886	888	first strand
Strand 2	D	974	975	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	897	899	first strand
Strand 2	D	960	963	anti-parallel
Strand 3	D	924	925	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1075	1077	first strand
Strand 2	D	1064	1068	anti-parallel
Strand 3	D	1051	1055	anti-parallel
Strand 4	D	1104	1105	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1180	1182	first strand
Strand 2	D	1164	1169	anti-parallel
Strand 3	D	1202	1206	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1274	first strand
Strand 2	E	104	107	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	45	first strand
Strand 2	J	27	33	anti-parallel
Strand 3	J	61	64	anti-parallel
Strand 4	J	53	55	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6C04

Analysis of interatomic Contacts of Structural Units in PDB entry:
6C04