Analysis of interatomic Contacts of Structural Units in PDB entry:
6C0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C0B entry

There are 2 chains in PDB entry 6C0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1284TYR 1804
B
 ASP 35HIS 155
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6C0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1370 1375Right-handed 310
Helix 2
AA2
A
1432 1439Right-handed alpha
Helix 3
AA3
A
1439 1450Right-handed alpha
Helix 4
AA4
A
1558 1573Right-handed alpha
Helix 5
AA5
A
1579 1588Right-handed alpha
Helix 6
AA6
A
1589 1593Right-handed 310
Helix 7
AA7
A
1679 1682Right-handed 310
Helix 8
AA8
A
1736 1739Right-handed 310
Helix 9
AA9
A
1773 1779Right-handed alpha
Helix 10
AB1
A
1792 1799Right-handed alpha
Helix 11
AB2
B
44 48Right-handed 310
Helix 12
AB3
B
65 75Right-handed alpha
Helix 13
AB4
B
76 82Right-handed alpha
Helix 14
AB5
B
87 97Right-handed alpha
Helix 15
AB6
B
110 128Right-handed alpha
Helix 16
AB7
B
133 141Right-handed 310
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There are 6 sheets in PDB entry 6C0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1286 1291first strand
Strand 2
A
1313 1318parallel
Strand 3
A
1333 1337parallel
Strand 4
A
1387 1392parallel
Strand 5
A
1381 1384anti-parallel
Strand 6
A
1376 1378anti-parallel
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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1297 1299first strand
Strand 2
A
1322 1326parallel
Strand 3
A
1343 1347parallel
Strand 4
A
1401 1409parallel
Strand 5
A
1412 1419anti-parallel
Strand 6
A
1424 1431anti-parallel
Strand 7
A
1459 1465parallel
Strand 8
A
1470 1476anti-parallel
Strand 9
A
1481 1487anti-parallel
Strand 10
A
1492 1498anti-parallel
Strand 11
A
1506 1510anti-parallel
Strand 12
A
1595 1596anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1353 1358first strand
Strand 2
A
1361 1367anti-parallel
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There are 15 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1514 1521first strand
Strand 2
A
1524 1532anti-parallel
Strand 3
A
1537 1546anti-parallel
Strand 4
A
1549 1557anti-parallel
Strand 5
A
1603 1616parallel
Strand 6
A
1619 1625anti-parallel
Strand 7
A
1631 1640anti-parallel
Strand 8
A
1643 1648anti-parallel
Strand 9
A
1655 1659anti-parallel
Strand 10
A
1690 1693parallel
Strand 11
A
1716 1719parallel
Strand 12
A
1764 1767parallel
Strand 13
A
1748 1752anti-parallel
Strand 14
A
1741 1745anti-parallel
Strand 15
A
1800 1801parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1673 1677first strand
Strand 2
A
1701 1705parallel
Strand 3
A
1729 1733parallel
Strand 4
A
1780 1783parallel
Strand 5
A
1790 1791anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
54 57anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il