Analysis of interatomic Contacts of Structural Units in PDB entry:
6C0V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C0V entry

There is 1 chain in PDB entry 6C0V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 35GLY 1276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6C0V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 68Right-handed alpha
Helix 2
AA2
A
69 79Right-handed alpha
Helix 3
AA3
A
106 157Right-handed alpha
Helix 4
AA4
A
159 166Right-handed alpha
Helix 5
AA5
A
167 169Right-handed 310
Helix 6
AA6
A
170 186Right-handed alpha
Helix 7
AA7
A
187 211Right-handed alpha
Helix 8
AA8
A
213 220Right-handed alpha
Helix 9
AA9
A
221 260Right-handed alpha
Helix 10
AB1
A
260 268Right-handed alpha
Helix 11
AB2
A
269 319Right-handed alpha
Helix 12
AB3
A
319 324Right-handed alpha
Helix 13
AB4
A
327 362Right-handed alpha
Helix 14
AB5
A
362 371Right-handed alpha
Helix 15
AB6
A
432 441Right-handed alpha
Helix 16
AB7
A
462 468Right-handed alpha
Helix 17
AB8
A
483 490Right-handed alpha
Helix 18
AB9
A
496 508Right-handed alpha
Helix 19
AC1
A
510 516Right-handed alpha
Helix 20
AC2
A
532 548Right-handed alpha
Helix 21
AC3
A
562 576Right-handed alpha
Helix 22
AC4
A
589 594Right-handed alpha
Helix 23
AC5
A
611 618Right-handed alpha
Helix 24
AC6
A
620 630Right-handed alpha
Helix 25
AC7
A
696 704Right-handed alpha
Helix 26
AC8
A
707 723Right-handed alpha
Helix 27
AC9
A
723 740Right-handed alpha
Helix 28
AD1
A
747 797Right-handed alpha
Helix 29
AD2
A
800 805Right-handed alpha
Helix 30
AD3
A
810 830Right-handed alpha
Helix 31
AD4
A
830 853Right-handed alpha
Helix 32
AD5
A
857 863Right-handed alpha
Helix 33
AD6
A
864 903Right-handed alpha
Helix 34
AD7
A
903 911Right-handed alpha
Helix 35
AD8
A
913 924Right-handed alpha
Helix 36
AD9
A
924 966Right-handed alpha
Helix 37
AE1
A
970 982Right-handed alpha
Helix 38
AE2
A
983 993Right-handed alpha
Helix 39
AE3
A
994 1014Right-handed alpha
Helix 40
AE4
A
1076 1084Right-handed alpha
Helix 41
AE5
A
1105 1113Right-handed alpha
Helix 42
AE6
A
1126 1133Right-handed alpha
Helix 43
AE7
A
1141 1153Right-handed alpha
Helix 44
AE8
A
1154 1161Right-handed alpha
Helix 45
AE9
A
1163 1167Right-handed 310
Helix 46
AF1
A
1177 1191Right-handed alpha
Helix 47
AF2
A
1207 1221Right-handed alpha
Helix 48
AF3
A
1233 1240Right-handed alpha
Helix 49
AF4
A
1256 1263Right-handed alpha
Helix 50
AF5
A
1265 1273Right-handed alpha
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There are 5 sheets in PDB entry 6C0V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 418first strand
Strand 2
A
391 395anti-parallel
Strand 3
A
452 453anti-parallel
Strand 4
A
456 457anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 399first strand
Strand 2
A
410 411anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 473first strand
Strand 2
A
551 555parallel
Strand 3
A
581 585parallel
Strand 4
A
422 426parallel
Strand 5
A
597 602parallel
Strand 6
A
605 610anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1053 1060first strand
Strand 2
A
1035 1042anti-parallel
Strand 3
A
1091 1096anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1116first strand
Strand 2
A
1196 1200parallel
Strand 3
A
1226 1230parallel
Strand 4
A
1065 1069parallel
Strand 5
A
1242 1247parallel
Strand 6
A
1250 1255anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il