Analysis of interatomic Contacts of Structural Units in PDB entry:
6C4H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C4H entry

There are 22 chains in PDB entry 6C4H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 G 733 U 744
A
 G 748 G 954
A
 G 956 U 1834
A
 C 1836 A 1938
A
 U 1940 C 1961
A
 U 1963 U 2068
A
 A 2070 G 2250
A
 G 2252 G 2444
A
 G 2446 C 2456
A
 G 2458 A 2497
A
 C 2499 G 2502
A
 G 2505 C 2551
A
 G 2553 C 2579
A
 G 2581 U 2604
A
 C 2606 C 2620
C
 ALA 211THR 257
D
 PHE 118GLN 164
N
 THR 74GLU 90
X
 SER 9ALA 18
x
 C 0 A 76
v
 ILE 234GLY 251
v
 HIS 253TYR 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 6C4H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
221 225Right-handed 310
Helix 2
AA2
D
120 125Right-handed alpha
Helix 3
AA3
v
279 296Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6C4H.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
v
239 244first strand
Strand 2
v
260 265anti-parallel
Strand 3
v
270 274anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il