Analysis of interatomic Contacts of Structural Units in PDB entry:
6C90


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6C90 entry

There are 2 chains in PDB entry 6C90 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 90LEU 1042
B
PRO 659GLN 700
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 6C90. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
141 153Right-handed alpha
Helix 2
AA2
A
167 181Right-handed alpha
Helix 3
AA3
A
191 207Right-handed alpha
Helix 4
AA4
A
229 238Right-handed alpha
Helix 5
AA5
A
240 244Right-handed 310
Helix 6
AA6
A
253 257Right-handed 310
Helix 7
AA7
A
262 273Right-handed alpha
Helix 8
AA8
A
288 301Right-handed alpha
Helix 9
AA9
A
339 349Right-handed alpha
Helix 10
AB1
A
371 384Right-handed alpha
Helix 11
AB2
A
395 406Right-handed alpha
Helix 12
AB3
A
407 409Right-handed 310
Helix 13
AB4
A
413 429Right-handed alpha
Helix 14
AB5
A
432 437Right-handed alpha
Helix 15
AB6
A
438 450Right-handed alpha
Helix 16
AB7
A
460 473Right-handed alpha
Helix 17
AB8
A
483 488Right-handed 310
Helix 18
AB9
A
513 522Right-handed alpha
Helix 19
AC1
A
544 554Right-handed alpha
Helix 20
AC2
A
566 576Right-handed alpha
Helix 21
AC3
A
580 588Right-handed alpha
Helix 22
AC4
A
588 598Right-handed alpha
Helix 23
AC5
A
847 861Right-handed alpha
Helix 24
AC6
A
871 878Right-handed alpha
Helix 25
AC7
A
884 895Right-handed alpha
Helix 26
AC8
A
901 910Right-handed alpha
Helix 27
AC9
A
911 913Right-handed 310
Helix 28
AD1
A
925 949Right-handed alpha
Helix 29
AD2
A
954 961Right-handed alpha
Helix 30
AD3
A
966 975Right-handed alpha
Helix 31
AD4
A
978 984Right-handed alpha
Helix 32
AD5
A
989 1014Right-handed alpha
Helix 33
AD6
A
1016 1031Right-handed alpha
Helix 34
AD7
A
1032 1037Right-handed 310
Helix 35
AD8
B
662 668Right-handed alpha
Helix 36
AD9
B
683 691Right-handed alpha
Helix 37
AE1
B
695 700Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6C90. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
99 104first strand
Strand 2
A
111 117anti-parallel
Strand 3
A
304 308anti-parallel
Strand 4
A
156 160parallel
Strand 5
A
278 283parallel
Strand 6
A
246 251parallel
Strand 7
A
184 189parallel
Strand 8
A
224 228parallel
Strand 9
A
209 212parallel
Strand 10
A
217 218anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
329 332first strand
Strand 2
A
316 322anti-parallel
Strand 3
A
533 539parallel
Strand 4
A
495 498parallel
Strand 5
A
389 392parallel
Strand 6
A
478 481parallel
Strand 7
A
452 455parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
502 504first strand
Strand 2
A
509 511anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il