Analysis of interatomic Contacts of Structural Units in PDB entry:
6CA0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CA0 entry

There are 10 chains in PDB entry 6CA0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 7	ASP 236
B	THR 6	ASP 233
C	TYR 3	GLU 1342
D	THR 14	GLY 1376
E	ALA 2	ALA 77
F	GLU 90	ASP 612
G	C 3	C 47
H	T 26	G 60
I	T 15	C 25
J	G 3	A 13

There are133 helices in PDB entry 6CA0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	51	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	156	160	Right-handed 310
Helix 4	AA4	A	212	233	Right-handed alpha
Helix 5	AA5	B	34	50	Right-handed alpha
Helix 6	AA6	B	77	87	Right-handed alpha
Helix 7	AA7	B	113	115	Right-handed 310
Helix 8	AA8	B	154	161	Right-handed alpha
Helix 9	AA9	B	212	229	Right-handed alpha
Helix 10	AB1	C	4	10	Right-handed alpha
Helix 11	AB2	C	28	39	Right-handed alpha
Helix 12	AB3	C	48	57	Right-handed alpha
Helix 13	AB4	C	81	89	Right-handed alpha
Helix 14	AB5	C	206	213	Right-handed alpha
Helix 15	AB6	C	216	225	Right-handed alpha
Helix 16	AB7	C	270	281	Right-handed alpha
Helix 17	AB8	C	288	293	Right-handed alpha
Helix 18	AB9	C	318	329	Right-handed alpha
Helix 19	AC1	C	345	354	Right-handed alpha
Helix 20	AC2	C	358	371	Right-handed alpha
Helix 21	AC3	C	377	390	Right-handed alpha
Helix 22	AC4	C	398	409	Right-handed alpha
Helix 23	AC5	C	421	438	Right-handed alpha
Helix 24	AC6	C	447	449	Right-handed 310
Helix 25	AC7	C	455	482	Right-handed alpha
Helix 26	AC8	C	495	508	Right-handed alpha
Helix 27	AC9	C	519	528	Right-handed alpha
Helix 28	AD1	C	544	549	Right-handed alpha
Helix 29	AD2	C	551	555	Right-handed 310
Helix 30	AD3	C	607	614	Right-handed alpha
Helix 31	AD4	C	656	661	Right-handed 310
Helix 32	AD5	C	662	668	Right-handed alpha
Helix 33	AD6	C	670	674	Right-handed 310
Helix 34	AD7	C	675	687	Right-handed alpha
Helix 35	AD8	C	704	712	Right-handed alpha
Helix 36	AD9	C	820	825	Right-handed alpha
Helix 37	AE1	C	858	864	Right-handed alpha
Helix 38	AE2	C	896	907	Right-handed alpha
Helix 39	AE3	C	942	981	Right-handed alpha
Helix 40	AE4	C	986	991	Right-handed alpha
Helix 41	AE5	C	1005	1038	Right-handed alpha
Helix 42	AE6	C	1081	1085	Right-handed 310
Helix 43	AE7	C	1099	1103	Right-handed 310
Helix 44	AE8	C	1109	1135	Right-handed alpha
Helix 45	AE9	C	1137	1151	Right-handed alpha
Helix 46	AF1	C	1166	1176	Right-handed alpha
Helix 47	AF2	C	1177	1179	Right-handed 310
Helix 48	AF3	C	1191	1202	Right-handed alpha
Helix 49	AF4	C	1238	1243	Right-handed alpha
Helix 50	AF5	C	1271	1281	Right-handed alpha
Helix 51	AF6	C	1283	1292	Right-handed alpha
Helix 52	AF7	C	1297	1311	Right-handed alpha
Helix 53	AF8	C	1320	1333	Right-handed alpha
Helix 54	AF9	D	26	33	Right-handed alpha
Helix 55	AG1	D	58	63	Right-handed alpha
Helix 56	AG2	D	94	100	Right-handed 310
Helix 57	AG3	D	114	119	Right-handed alpha
Helix 58	AG4	D	122	128	Right-handed alpha
Helix 59	AG5	D	131	140	Right-handed alpha
Helix 60	AG6	D	161	172	Right-handed alpha
Helix 61	AG7	D	180	192	Right-handed alpha
Helix 62	AG8	D	193	208	Right-handed alpha
Helix 63	AG9	D	210	231	Right-handed alpha
Helix 64	AH1	D	233	236	Right-handed 310
Helix 65	AH2	D	246	250	Right-handed 310
Helix 66	AH3	D	255	259	Right-handed 310
Helix 67	AH4	D	263	285	Right-handed alpha
Helix 68	AH5	D	288	308	Right-handed alpha
Helix 69	AH6	D	326	332	Right-handed alpha
Helix 70	AH7	D	370	377	Right-handed alpha
Helix 71	AH8	D	377	388	Right-handed alpha
Helix 72	AH9	D	393	404	Right-handed alpha
Helix 73	AI1	D	405	419	Right-handed alpha
Helix 74	AI2	D	430	432	Right-handed 310
Helix 75	AI3	D	453	458	Right-handed alpha
Helix 76	AI4	D	473	483	Right-handed alpha
Helix 77	AI5	D	485	489	Right-handed 310
Helix 78	AI6	D	504	515	Right-handed alpha
Helix 79	AI7	D	529	539	Right-handed alpha
Helix 80	AI8	D	574	583	Right-handed alpha
Helix 81	AI9	D	588	592	Right-handed 310
Helix 82	AJ1	D	597	612	Right-handed alpha
Helix 83	AJ2	D	613	636	Right-handed alpha
Helix 84	AJ3	D	640	644	Right-handed 310
Helix 85	AJ4	D	649	670	Right-handed alpha
Helix 86	AJ5	D	674	703	Right-handed alpha
Helix 87	AJ6	D	720	728	Right-handed alpha
Helix 88	AJ7	D	733	742	Right-handed alpha
Helix 89	AJ8	D	768	805	Right-handed alpha
Helix 90	AJ9	D	834	840	Right-handed alpha
Helix 91	AK1	D	865	875	Right-handed alpha
Helix 92	AK2	D	896	900	Right-handed alpha
Helix 93	AK3	D	914	925	Right-handed alpha
Helix 94	AK4	D	1068	1072	Right-handed 310
Helix 95	AK5	D	1136	1146	Right-handed alpha
Helix 96	AK6	D	1216	1224	Right-handed alpha
Helix 97	AK7	D	1225	1245	Right-handed alpha
Helix 98	AK8	D	1249	1261	Right-handed alpha
Helix 99	AK9	D	1280	1293	Right-handed alpha
Helix 100	AL1	D	1308	1315	Right-handed alpha
Helix 101	AL2	D	1318	1326	Right-handed alpha
Helix 102	AL3	D	1327	1339	Right-handed alpha
Helix 103	AL4	D	1346	1353	Right-handed alpha
Helix 104	AL5	D	1359	1361	Right-handed 310
Helix 105	AL6	D	1362	1373	Right-handed alpha
Helix 106	AL7	E	6	13	Right-handed alpha
Helix 107	AL8	E	17	32	Right-handed alpha
Helix 108	AL9	E	45	56	Right-handed alpha
Helix 109	AM1	E	60	77	Right-handed alpha
Helix 110	AM2	F	96	106	Right-handed alpha
Helix 111	AM3	F	112	137	Right-handed alpha
Helix 112	AM4	F	137	154	Right-handed alpha
Helix 113	AM5	F	214	234	Right-handed alpha
Helix 114	AM6	F	244	258	Right-handed alpha
Helix 115	AM7	F	262	295	Right-handed alpha
Helix 116	AM8	F	298	307	Right-handed alpha
Helix 117	AM9	F	313	322	Right-handed alpha
Helix 118	AN1	F	324	329	Right-handed alpha
Helix 119	AN2	F	330	332	Right-handed 310
Helix 120	AN3	F	333	352	Right-handed alpha
Helix 121	AN4	F	354	383	Right-handed alpha
Helix 122	AN5	F	383	394	Right-handed alpha
Helix 123	AN6	F	400	419	Right-handed alpha
Helix 124	AN7	F	420	424	Right-handed 310
Helix 125	AN8	F	426	447	Right-handed alpha
Helix 126	AN9	F	453	475	Right-handed alpha
Helix 127	AO1	F	479	487	Right-handed alpha
Helix 128	AO2	F	491	501	Right-handed alpha
Helix 129	AO3	F	530	551	Right-handed alpha
Helix 130	AO4	F	552	563	Right-handed alpha
Helix 131	AO5	F	572	580	Right-handed alpha
Helix 132	AO6	F	584	600	Right-handed alpha
Helix 133	AO7	F	604	609	Right-handed alpha

There are 44 sheets in PDB entry 6CA0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	18	first strand
Strand 2	A	23	32	anti-parallel
Strand 3	A	198	207	anti-parallel
Strand 4	A	180	189	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	98	105	anti-parallel
Strand 3	A	139	150	anti-parallel
Strand 4	A	52	60	anti-parallel
Strand 5	A	170	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	23	31	anti-parallel
Strand 3	B	195	207	anti-parallel
Strand 4	B	180	192	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	105	first strand
Strand 2	B	139	150	anti-parallel
Strand 3	B	52	61	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	121	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	129	133	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	75	first strand
Strand 2	C	93	104	anti-parallel
Strand 3	C	115	118	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	75	first strand
Strand 2	C	93	104	anti-parallel
Strand 3	C	122	128	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	184	187	anti-parallel
Strand 4	C	195	196	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	231	first strand
Strand 2	C	332	336	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	240	first strand
Strand 2	C	284	285	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	315	316	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	598	606	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	652	654	anti-parallel
Strand 4	C	616	617	parallel
Strand 5	C	633	637	anti-parallel
Strand 6	C	642	646	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	623	624	first strand
Strand 2	C	628	629	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	727	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	784	785	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1209	1210	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	1065	1068	anti-parallel
Strand 4	C	1073	1080	anti-parallel
Strand 5	C	816	819	parallel
Strand 6	C	1096	1098	anti-parallel
Strand 7	C	798	804	parallel
Strand 8	C	1225	1234	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	846	847	first strand
Strand 2	C	830	843	anti-parallel
Strand 3	C	1046	1058	anti-parallel
Strand 4	C	927	935	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	887	889	first strand
Strand 2	C	913	915	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	356	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	424	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel
Strand 7	D	447	448	anti-parallel
Strand 8	D	350	356	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1339	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	102	112	parallel
Strand 3	D	238	244	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	159	160	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	262	first strand
Strand 2	F	505	506	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	527	first strand
Strand 2	D	547	554	parallel
Strand 3	D	566	573	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	811	first strand
Strand 2	D	894	895	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	949	952	first strand
Strand 2	D	1015	1019	anti-parallel
Strand 3	D	1002	1003	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	960	961	first strand
Strand 2	D	981	982	anti-parallel
Strand 3	D	995	996	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1035	1038	first strand
Strand 2	D	1077	1080	anti-parallel
Strand 3	D	1098	1099	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1059	1061	first strand
Strand 2	D	1105	1107	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1187	1191	first strand
Strand 2	D	1172	1177	anti-parallel
Strand 3	D	1161	1165	anti-parallel
Strand 4	D	1202	1204	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1277	1279	first strand
Strand 2	D	1263	1266	anti-parallel
Strand 3	D	1302	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CA0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CA0