Analysis of interatomic Contacts of Structural Units in PDB entry:
6CAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CAJ entry

There are 10 chains in PDB entry 6CAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
PRO 41SER 466
J
MET 1ASP 292
H
LYS 4LEU 305
C
GLY 8LEU 351
F
GLN 166ASP 522
A
PRO 41SER 466
I
MET 1ASP 292
G
LYS 4LEU 305
D
GLY 8LEU 351
E
GLN 166ASP 522
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are130 helices in PDB entry 6CAJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
64 68Right-handed 310
Helix 2
AA2
B
74 87Right-handed alpha
Helix 3
AA3
B
98 108Right-handed alpha
Helix 4
AA4
B
109 113Right-handed 310
Helix 5
AA5
B
130 142Right-handed alpha
Helix 6
AA6
B
161 176Right-handed alpha
Helix 7
AA7
B
228 234Right-handed alpha
Helix 8
AA8
B
253 263Right-handed alpha
Helix 9
AA9
B
268 278Right-handed alpha
Helix 10
AB1
B
302 315Right-handed alpha
Helix 11
AB2
B
339 341Right-handed 310
Helix 12
AB3
J
36 46Right-handed alpha
Helix 13
AB4
J
63 68Right-handed alpha
Helix 14
AB5
J
85 93Right-handed alpha
Helix 15
AB6
J
94 97Right-handed 310
Helix 16
AB7
J
114 124Right-handed alpha
Helix 17
AB8
J
184 190Right-handed alpha
Helix 18
AB9
J
208 218Right-handed alpha
Helix 19
AC1
J
223 227Right-handed 310
Helix 20
AC2
J
283 288Right-handed alpha
Helix 21
AC3
H
5 16Right-handed alpha
Helix 22
AC4
H
21 36Right-handed alpha
Helix 23
AC5
H
45 56Right-handed alpha
Helix 24
AC6
H
62 77Right-handed alpha
Helix 25
AC7
H
92 106Right-handed alpha
Helix 26
AC8
H
106 116Right-handed alpha
Helix 27
AC9
H
131 144Right-handed alpha
Helix 28
AD1
H
160 170Right-handed alpha
Helix 29
AD2
H
179 183Right-handed 310
Helix 30
AD3
H
211 222Right-handed alpha
Helix 31
AD4
H
247 252Right-handed alpha
Helix 32
AD5
H
277 281Right-handed 310
Helix 33
AD6
H
293 304Right-handed alpha
Helix 34
AD7
C
9 25Right-handed alpha
Helix 35
AD8
C
30 48Right-handed alpha
Helix 36
AD9
C
53 72Right-handed alpha
Helix 37
AE1
C
75 96Right-handed alpha
Helix 38
AE2
C
126 146Right-handed alpha
Helix 39
AE3
C
146 154Right-handed alpha
Helix 40
AE4
C
155 159Right-handed 310
Helix 41
AE5
C
171 182Right-handed alpha
Helix 42
AE6
C
199 209Right-handed alpha
Helix 43
AE7
C
218 220Right-handed 310
Helix 44
AE8
C
221 226Right-handed alpha
Helix 45
AE9
C
227 229Right-handed 310
Helix 46
AF1
C
250 261Right-handed alpha
Helix 47
AF2
C
296 304Right-handed 310
Helix 48
AF3
C
317 321Right-handed 310
Helix 49
AF4
C
332 334Right-handed 310
Helix 50
AF5
C
335 344Right-handed alpha
Helix 51
AF6
C
345 349Right-handed 310
Helix 52
AF7
F
191 196Right-handed 310
Helix 53
AF8
F
204 216Right-handed alpha
Helix 54
AF9
F
221 239Right-handed alpha
Helix 55
AG1
F
247 267Right-handed alpha
Helix 56
AG2
F
270 286Right-handed alpha
Helix 57
AG3
F
292 325Right-handed alpha
Helix 58
AG4
F
339 352Right-handed alpha
Helix 59
AG5
F
368 379Right-handed alpha
Helix 60
AG6
F
388 395Right-handed alpha
Helix 61
AG7
F
420 430Right-handed alpha
Helix 62
AG8
F
439 443Right-handed 310
Helix 63
AG9
F
459 463Right-handed 310
Helix 64
AH1
F
508 510Right-handed 310
Helix 65
AH2
F
511 520Right-handed alpha
Helix 66
AH3
A
64 68Right-handed 310
Helix 67
AH4
A
74 87Right-handed alpha
Helix 68
AH5
A
98 108Right-handed alpha
Helix 69
AH6
A
109 113Right-handed 310
Helix 70
AH7
A
130 142Right-handed alpha
Helix 71
AH8
A
161 176Right-handed alpha
Helix 72
AH9
A
228 234Right-handed alpha
Helix 73
AI1
A
253 263Right-handed alpha
Helix 74
AI2
A
268 278Right-handed alpha
Helix 75
AI3
A
302 315Right-handed alpha
Helix 76
AI4
A
339 341Right-handed 310
Helix 77
AI5
I
36 46Right-handed alpha
Helix 78
AI6
I
63 68Right-handed alpha
Helix 79
AI7
I
85 93Right-handed alpha
Helix 80
AI8
I
94 97Right-handed 310
Helix 81
AI9
I
114 124Right-handed alpha
Helix 82
AJ1
I
184 190Right-handed alpha
Helix 83
AJ2
I
208 218Right-handed alpha
Helix 84
AJ3
I
223 227Right-handed 310
Helix 85
AJ4
I
283 288Right-handed alpha
Helix 86
AJ5
G
5 16Right-handed alpha
Helix 87
AJ6
G
21 36Right-handed alpha
Helix 88
AJ7
G
45 56Right-handed alpha
Helix 89
AJ8
G
62 77Right-handed alpha
Helix 90
AJ9
G
92 106Right-handed alpha
Helix 91
AK1
G
106 116Right-handed alpha
Helix 92
AK2
G
131 144Right-handed alpha
Helix 93
AK3
G
160 170Right-handed alpha
Helix 94
AK4
G
179 183Right-handed 310
Helix 95
AK5
G
211 222Right-handed alpha
Helix 96
AK6
G
247 252Right-handed alpha
Helix 97
AK7
G
277 281Right-handed 310
Helix 98
AK8
G
293 304Right-handed alpha
Helix 99
AK9
D
9 25Right-handed alpha
Helix 100
AL1
D
30 48Right-handed alpha
Helix 101
AL2
D
53 72Right-handed alpha
Helix 102
AL3
D
75 96Right-handed alpha
Helix 103
AL4
D
126 146Right-handed alpha
Helix 104
AL5
D
146 154Right-handed alpha
Helix 105
AL6
D
155 159Right-handed 310
Helix 106
AL7
D
171 182Right-handed alpha
Helix 107
AL8
D
199 209Right-handed alpha
Helix 108
AL9
D
218 220Right-handed 310
Helix 109
AM1
D
221 226Right-handed alpha
Helix 110
AM2
D
227 229Right-handed 310
Helix 111
AM3
D
250 261Right-handed alpha
Helix 112
AM4
D
296 304Right-handed 310
Helix 113
AM5
D
317 321Right-handed 310
Helix 114
AM6
D
332 334Right-handed 310
Helix 115
AM7
D
335 344Right-handed alpha
Helix 116
AM8
D
345 349Right-handed 310
Helix 117
AM9
E
191 196Right-handed 310
Helix 118
AN1
E
204 216Right-handed alpha
Helix 119
AN2
E
221 239Right-handed alpha
Helix 120
AN3
E
247 267Right-handed alpha
Helix 121
AN4
E
270 286Right-handed alpha
Helix 122
AN5
E
292 325Right-handed alpha
Helix 123
AN6
E
339 352Right-handed alpha
Helix 124
AN7
E
368 379Right-handed alpha
Helix 125
AN8
E
388 395Right-handed alpha
Helix 126
AN9
E
420 430Right-handed alpha
Helix 127
AO1
E
439 443Right-handed 310
Helix 128
AO2
E
459 463Right-handed 310
Helix 129
AO3
E
508 510Right-handed 310
Helix 130
AO4
E
511 520Right-handed alpha
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There are 36 sheets in PDB entry 6CAJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
119 123first strand
Strand 2
B
90 94parallel
Strand 3
B
44 48parallel
Strand 4
B
148 152parallel
Strand 5
B
251 252anti-parallel
Strand 6
B
179 187anti-parallel
Strand 7
B
244 246anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
119 123first strand
Strand 2
B
90 94parallel
Strand 3
B
44 48parallel
Strand 4
B
148 152parallel
Strand 5
B
251 252anti-parallel
Strand 6
B
179 187anti-parallel
Strand 7
B
286 292parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
155 157first strand
Strand 2
B
297 299anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
211 212first strand
Strand 2
B
201 206anti-parallel
Strand 3
B
216 217anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
211 212first strand
Strand 2
B
201 206anti-parallel
Strand 3
B
238 241anti-parallel
Strand 4
J
192 196anti-parallel
Strand 5
J
157 161anti-parallel
Strand 6
J
167 171anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
223 226first strand
Strand 2
J
180 183anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
336 337first strand
Strand 2
B
343 344anti-parallel
Strand 3
B
361 362parallel
Strand 4
B
378 379parallel
Strand 5
B
395 396parallel
Strand 6
B
412 413parallel
Strand 7
B
429 431parallel
Strand 8
B
447 449parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
355 356first strand
Strand 2
B
373 375parallel
Strand 3
B
390 392parallel
Strand 4
B
407 409parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
367 368first strand
Strand 2
B
384 385parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
418 419first strand
Strand 2
B
436 437parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
76 78first strand
Strand 2
J
52 54parallel
Strand 3
J
3 8parallel
Strand 4
J
100 105parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
200 201first strand
Strand 2
J
128 133anti-parallel
Strand 3
J
263 272parallel
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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
175 178first strand
Strand 2
H
149 153parallel
Strand 3
H
124 127parallel
Strand 4
H
192 195parallel
Strand 5
H
226 228parallel
Strand 6
H
283 286parallel
Strand 7
H
289 291anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
199 200first strand
Strand 2
H
206 209anti-parallel
Strand 3
H
273 276anti-parallel
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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
329 331first strand
Strand 2
C
323 326anti-parallel
Strand 3
C
265 268parallel
Strand 4
C
231 234parallel
Strand 5
C
164 168parallel
Strand 6
C
188 192parallel
Strand 7
C
214 217parallel
Strand 8
F
482 484parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
238 239first strand
Strand 2
C
245 248anti-parallel
Strand 3
C
313 316anti-parallel
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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
306 307first strand
Strand 2
F
383 387parallel
Strand 3
F
357 362parallel
Strand 4
F
332 336parallel
Strand 5
F
400 404parallel
Strand 6
F
434 437parallel
Strand 7
F
499 502parallel
Strand 8
F
505 507anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
407 408first strand
Strand 2
F
414 417anti-parallel
Strand 3
F
489 490anti-parallel
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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
119 123first strand
Strand 2
A
90 94parallel
Strand 3
A
44 48parallel
Strand 4
A
148 152parallel
Strand 5
A
251 252anti-parallel
Strand 6
A
179 187anti-parallel
Strand 7
A
244 246anti-parallel
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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
119 123first strand
Strand 2
A
90 94parallel
Strand 3
A
44 48parallel
Strand 4
A
148 152parallel
Strand 5
A
251 252anti-parallel
Strand 6
A
179 187anti-parallel
Strand 7
A
286 292parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
155 157first strand
Strand 2
A
297 299anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
211 212first strand
Strand 2
A
201 206anti-parallel
Strand 3
A
216 217anti-parallel
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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
211 212first strand
Strand 2
A
201 206anti-parallel
Strand 3
A
238 241anti-parallel
Strand 4
I
192 196anti-parallel
Strand 5
I
157 161anti-parallel
Strand 6
I
167 171anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
223 226first strand
Strand 2
I
180 183anti-parallel
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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
336 337first strand
Strand 2
A
343 344anti-parallel
Strand 3
A
361 362parallel
Strand 4
A
378 379parallel
Strand 5
A
395 396parallel
Strand 6
A
412 413parallel
Strand 7
A
429 431parallel
Strand 8
A
447 449parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
355 356first strand
Strand 2
A
373 375parallel
Strand 3
A
390 392parallel
Strand 4
A
407 409parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
367 368first strand
Strand 2
A
384 385parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
418 419first strand
Strand 2
A
436 437parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
76 78first strand
Strand 2
I
52 54parallel
Strand 3
I
3 8parallel
Strand 4
I
100 105parallel
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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
200 201first strand
Strand 2
I
128 133anti-parallel
Strand 3
I
263 266parallel
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There are 7 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
175 178first strand
Strand 2
G
149 153parallel
Strand 3
G
124 127parallel
Strand 4
G
192 195parallel
Strand 5
G
226 228parallel
Strand 6
G
283 286parallel
Strand 7
G
289 291anti-parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
199 200first strand
Strand 2
G
206 209anti-parallel
Strand 3
G
273 276anti-parallel
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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
329 331first strand
Strand 2
D
323 326anti-parallel
Strand 3
D
265 268parallel
Strand 4
D
231 234parallel
Strand 5
D
164 168parallel
Strand 6
D
188 192parallel
Strand 7
D
214 217parallel
Strand 8
E
482 484parallel
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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
238 239first strand
Strand 2
D
245 248anti-parallel
Strand 3
D
313 316anti-parallel
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There are 8 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
306 307first strand
Strand 2
E
383 387parallel
Strand 3
E
357 362parallel
Strand 4
E
332 336parallel
Strand 5
E
400 404parallel
Strand 6
E
434 437parallel
Strand 7
E
499 502parallel
Strand 8
E
505 507anti-parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
407 408first strand
Strand 2
E
414 417anti-parallel
Strand 3
E
489 490anti-parallel
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