Analysis of interatomic Contacts of Structural Units in PDB entry:
6CCV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CCV entry

There are 11 chains in PDB entry 6CCV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 221
B	MET 1	GLU 233
C	ASN 21	ARG 1139
D	VAL 4	ALA 1283
E	SER 24	GLY 106
F	SER 162	ASP 466
G	UNK 140	UNK 156
J	PRO 26	LYS 108
O	G 1	T 31
P	A 1	C 26
T	ILE 251	GLN 303

There are125 helices in PDB entry 6CCV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	46	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	203	217	Right-handed alpha
Helix 5	AA5	B	29	45	Right-handed alpha
Helix 6	AA6	B	72	82	Right-handed alpha
Helix 7	AA7	B	108	110	Right-handed 310
Helix 8	AA8	B	203	224	Right-handed alpha
Helix 9	AA9	C	45	57	Right-handed alpha
Helix 10	AB1	C	58	68	Right-handed alpha
Helix 11	AB2	C	75	85	Right-handed alpha
Helix 12	AB3	C	109	117	Right-handed alpha
Helix 13	AB4	C	224	232	Right-handed alpha
Helix 14	AB5	C	235	244	Right-handed alpha
Helix 15	AB6	C	246	256	Right-handed alpha
Helix 16	AB7	C	260	273	Right-handed alpha
Helix 17	AB8	C	279	291	Right-handed alpha
Helix 18	AB9	C	300	311	Right-handed alpha
Helix 19	AC1	C	325	342	Right-handed alpha
Helix 20	AC2	C	371	398	Right-handed alpha
Helix 21	AC3	C	404	409	Right-handed alpha
Helix 22	AC4	C	411	423	Right-handed alpha
Helix 23	AC5	C	435	443	Right-handed alpha
Helix 24	AC6	C	460	465	Right-handed alpha
Helix 25	AC7	C	467	471	Right-handed 310
Helix 26	AC8	C	524	530	Right-handed alpha
Helix 27	AC9	C	581	585	Right-handed 310
Helix 28	AD1	C	587	591	Right-handed 310
Helix 29	AD2	C	592	604	Right-handed alpha
Helix 30	AD3	C	620	628	Right-handed alpha
Helix 31	AD4	C	730	735	Right-handed alpha
Helix 32	AD5	C	806	817	Right-handed alpha
Helix 33	AD6	C	911	917	Right-handed alpha
Helix 34	AD7	C	919	934	Right-handed alpha
Helix 35	AD8	C	945	949	Right-handed 310
Helix 36	AD9	C	972	981	Right-handed alpha
Helix 37	AE1	C	1027	1032	Right-handed alpha
Helix 38	AE2	C	1060	1071	Right-handed alpha
Helix 39	AE3	C	1072	1081	Right-handed alpha
Helix 40	AE4	C	1088	1100	Right-handed alpha
Helix 41	AE5	C	1109	1121	Right-handed alpha
Helix 42	AE6	D	16	23	Right-handed alpha
Helix 43	AE7	D	84	90	Right-handed 310
Helix 44	AE8	D	103	108	Right-handed alpha
Helix 45	AE9	D	112	119	Right-handed alpha
Helix 46	AF1	D	121	130	Right-handed alpha
Helix 47	AF2	D	140	147	Right-handed alpha
Helix 48	AF3	D	147	187	Right-handed alpha
Helix 49	AF4	D	190	228	Right-handed alpha
Helix 50	AF5	D	239	247	Right-handed alpha
Helix 51	AF6	D	248	250	Right-handed 310
Helix 52	AF7	D	256	267	Right-handed alpha
Helix 53	AF8	D	269	284	Right-handed alpha
Helix 54	AF9	D	286	305	Right-handed alpha
Helix 55	AG1	D	308	311	Right-handed 310
Helix 56	AG2	D	321	325	Right-handed 310
Helix 57	AG3	D	339	361	Right-handed alpha
Helix 58	AG4	D	363	383	Right-handed alpha
Helix 59	AG5	D	393	397	Right-handed 310
Helix 60	AG6	D	402	407	Right-handed alpha
Helix 61	AG7	D	411	417	Right-handed alpha
Helix 62	AG8	D	445	452	Right-handed alpha
Helix 63	AG9	D	452	463	Right-handed alpha
Helix 64	AH1	D	468	478	Right-handed alpha
Helix 65	AH2	D	482	492	Right-handed alpha
Helix 66	AH3	D	505	507	Right-handed 310
Helix 67	AH4	D	525	527	Right-handed 310
Helix 68	AH5	D	528	533	Right-handed alpha
Helix 69	AH6	D	548	558	Right-handed alpha
Helix 70	AH7	D	580	590	Right-handed alpha
Helix 71	AH8	D	614	624	Right-handed alpha
Helix 72	AH9	D	643	651	Right-handed alpha
Helix 73	AI1	D	666	676	Right-handed alpha
Helix 74	AI2	D	688	703	Right-handed alpha
Helix 75	AI3	D	704	725	Right-handed alpha
Helix 76	AI4	D	740	761	Right-handed alpha
Helix 77	AI5	D	765	792	Right-handed alpha
Helix 78	AI6	D	796	804	Right-handed alpha
Helix 79	AI7	D	809	817	Right-handed alpha
Helix 80	AI8	D	844	881	Right-handed alpha
Helix 81	AI9	D	944	955	Right-handed alpha
Helix 82	AJ1	D	975	979	Right-handed alpha
Helix 83	AJ2	D	993	1004	Right-handed alpha
Helix 84	AJ3	D	1005	1009	Right-handed 310
Helix 85	AJ4	D	1028	1037	Right-handed alpha
Helix 86	AJ5	D	1082	1086	Right-handed 310
Helix 87	AJ6	D	1118	1127	Right-handed alpha
Helix 88	AJ7	D	1127	1146	Right-handed alpha
Helix 89	AJ8	D	1151	1160	Right-handed alpha
Helix 90	AJ9	D	1184	1193	Right-handed alpha
Helix 91	AK1	D	1210	1217	Right-handed alpha
Helix 92	AK2	D	1220	1228	Right-handed alpha
Helix 93	AK3	D	1229	1241	Right-handed alpha
Helix 94	AK4	D	1248	1256	Right-handed alpha
Helix 95	AK5	D	1261	1264	Right-handed 310
Helix 96	AK6	D	1265	1270	Right-handed alpha
Helix 97	AK7	D	1276	1283	Right-handed alpha
Helix 98	AK8	E	30	34	Right-handed 310
Helix 99	AK9	E	36	42	Right-handed alpha
Helix 100	AL1	E	46	65	Right-handed alpha
Helix 101	AL2	E	87	98	Right-handed alpha
Helix 102	AL3	F	164	174	Right-handed alpha
Helix 103	AL4	F	180	208	Right-handed alpha
Helix 104	AL5	F	212	246	Right-handed alpha
Helix 105	AL6	F	247	249	Right-handed 310
Helix 106	AL7	F	254	273	Right-handed alpha
Helix 107	AL8	F	280	301	Right-handed alpha
Helix 108	AL9	F	307	329	Right-handed alpha
Helix 109	AM1	F	333	341	Right-handed alpha
Helix 110	AM2	F	344	355	Right-handed alpha
Helix 111	AM3	F	372	377	Right-handed 310
Helix 112	AM4	F	384	405	Right-handed alpha
Helix 113	AM5	F	406	418	Right-handed alpha
Helix 114	AM6	F	426	434	Right-handed alpha
Helix 115	AM7	F	437	453	Right-handed alpha
Helix 116	AM8	F	454	459	Right-handed alpha
Helix 117	AM9	F	461	465	Right-handed 310
Helix 118	AN1	G	145	148	Right-handed 310
Helix 119	AN2	G	149	155	Right-handed alpha
Helix 120	AN3	J	80	87	Right-handed alpha
Helix 121	AN4	J	90	107	Right-handed alpha
Helix 122	AN5	T	257	268	Right-handed alpha
Helix 123	AN6	T	271	278	Right-handed alpha
Helix 124	AN7	T	279	285	Right-handed alpha
Helix 125	AN8	T	290	303	Right-handed alpha

There are 42 sheets in PDB entry 6CCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	11	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	179	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	99	first strand
Strand 2	A	134	143	anti-parallel
Strand 3	A	48	56	anti-parallel
Strand 4	A	162	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	171	181	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	99	first strand
Strand 2	B	134	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	161	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	116	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	124	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	31	first strand
Strand 2	C	963	964	parallel
Strand 3	C	617	618	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	94	103	anti-parallel
Strand 3	C	121	132	anti-parallel
Strand 4	C	137	138	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	94	103	anti-parallel
Strand 3	C	121	132	anti-parallel
Strand 4	C	141	149	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	162	166	anti-parallel
Strand 3	C	428	430	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	370	first strand
Strand 2	C	168	172	anti-parallel
Strand 3	C	445	447	parallel
Strand 4	C	488	490	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	180	first strand
Strand 2	C	191	196	anti-parallel
Strand 3	C	203	205	anti-parallel
Strand 4	C	216	217	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	346	first strand
Strand 2	C	354	355	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	510	anti-parallel
Strand 3	C	515	523	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	496	497	first strand
Strand 2	C	503	510	anti-parallel
Strand 3	C	569	571	anti-parallel
Strand 4	C	532	533	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	553	first strand
Strand 2	C	559	562	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	634	first strand
Strand 2	C	692	695	anti-parallel
Strand 3	C	678	679	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	658	662	first strand
Strand 2	C	648	653	anti-parallel
Strand 3	C	639	644	anti-parallel
Strand 4	C	686	687	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	700	first strand
Strand 2	C	703	704	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	998	999	first strand
Strand 2	C	1014	1023	anti-parallel
Strand 3	C	875	878	anti-parallel
Strand 4	C	883	890	anti-parallel
Strand 5	C	726	729	parallel
Strand 6	C	906	908	anti-parallel
Strand 7	C	707	713	parallel
Strand 8	C	1014	1023	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	756	757	first strand
Strand 2	C	740	753	anti-parallel
Strand 3	C	856	868	anti-parallel
Strand 4	C	836	845	anti-parallel
Strand 5	C	786	787	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	760	first strand
Strand 2	C	796	799	anti-parallel
Strand 3	C	823	825	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	794	first strand
Strand 2	C	828	829	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	935	936	first strand
Strand 2	C	956	957	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1035	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1058	1059	first strand
Strand 2	D	420	421	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1135	1136	first strand
Strand 2	C	1127	1129	anti-parallel
Strand 3	D	9	11	anti-parallel
Strand 4	D	1243	1244	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	92	102	parallel
Strand 3	D	313	319	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	329	first strand
Strand 2	D	335	337	anti-parallel
Strand 3	F	359	360	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	634	637	parallel
Strand 3	D	661	664	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	885	887	first strand
Strand 2	D	973	974	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	896	898	first strand
Strand 2	D	959	961	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1044	1045	first strand
Strand 2	D	1116	1117	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1076	1078	first strand
Strand 2	D	1064	1069	anti-parallel
Strand 3	D	1052	1057	anti-parallel
Strand 4	D	1105	1106	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1181	1183	first strand
Strand 2	D	1165	1168	anti-parallel
Strand 3	D	1204	1206	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1272	1275	first strand
Strand 2	E	101	104	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	39	45	first strand
Strand 2	J	27	34	anti-parallel
Strand 3	J	61	64	anti-parallel
Strand 4	J	53	55	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CCV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CCV