Analysis of interatomic Contacts of Structural Units in PDB entry:
6CCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CCY entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 2 chains in PDB entry 6CCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 141LYS 307
A
PHE 309GLY 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6CCY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
146 148Right-handed 310
Helix 2
AA2
A
183 189Right-handed alpha
Helix 3
AA3
A
191 205Right-handed alpha
Helix 4
AA4
A
234 243Right-handed alpha
Helix 5
AA5
A
246 267Right-handed alpha
Helix 6
AA6
A
276 278Right-handed 310
Helix 7
AA7
A
312 316Right-handed 310
Helix 8
AA8
A
317 322Right-handed alpha
Helix 9
AA9
A
329 345Right-handed alpha
Helix 10
AB1
A
353 364Right-handed alpha
Helix 11
AB2
A
373 384Right-handed alpha
Helix 12
AB3
A
398 404Right-handed alpha
Helix 13
AB4
A
405 409Right-handed 310
Helix 14
AB5
A
412 418Right-handed alpha
Helix 15
AB6
A
439 444Right-handed alpha
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There are 2 sheets in PDB entry 6CCY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
150 158first strand
Strand 2
A
162 169anti-parallel
Strand 3
A
175 182anti-parallel
Strand 4
A
222 228anti-parallel
Strand 5
A
213 218anti-parallel
Strand 6
A
477 478anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
280 282first strand
Strand 2
A
288 290anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il