Analysis of interatomic Contacts of Structural Units in PDB entry:
6CER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6CER entry

There are 4 chains in PDB entry 6CER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY -1	SER 361
B	SER 0	ILE 329
C	ALA 2	SER 361
D	GLY -1	ARG 294

There are118 helices in PDB entry 6CER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	55	Right-handed alpha
Helix 2	AA2	A	68	78	Right-handed alpha
Helix 3	AA3	A	91	98	Right-handed alpha
Helix 4	AA4	A	101	110	Right-handed alpha
Helix 5	AA5	A	140	156	Right-handed alpha
Helix 6	AA6	A	168	170	Right-handed 310
Helix 7	AA7	A	172	186	Right-handed alpha
Helix 8	AA8	A	212	216	Right-handed 310
Helix 9	AA9	A	229	246	Right-handed alpha
Helix 10	AB1	A	274	277	Right-handed 310
Helix 11	AB2	A	278	286	Right-handed alpha
Helix 12	AB3	A	286	298	Right-handed alpha
Helix 13	AB4	A	302	327	Right-handed alpha
Helix 14	AB5	A	331	335	Right-handed 310
Helix 15	AB6	B	5	20	Right-handed alpha
Helix 16	AB7	B	42	48	Right-handed alpha
Helix 17	AB8	B	58	72	Right-handed alpha
Helix 18	AB9	B	82	88	Right-handed 310
Helix 19	AC1	B	89	95	Right-handed alpha
Helix 20	AC2	B	99	104	Right-handed alpha
Helix 21	AC3	B	125	129	Right-handed 310
Helix 22	AC4	B	132	138	Right-handed alpha
Helix 23	AC5	B	149	163	Right-handed alpha
Helix 24	AC6	B	172	177	Right-handed alpha
Helix 25	AC7	B	183	188	Right-handed alpha
Helix 26	AC8	B	214	228	Right-handed alpha
Helix 27	AC9	B	245	257	Right-handed alpha
Helix 28	AD1	B	270	282	Right-handed alpha
Helix 29	AD2	B	284	288	Right-handed 310
Helix 30	AD3	B	305	311	Right-handed alpha
Helix 31	AD4	B	315	327	Right-handed alpha
Helix 32	AD5	C	29	55	Right-handed alpha
Helix 33	AD6	C	68	78	Right-handed alpha
Helix 34	AD7	C	91	98	Right-handed alpha
Helix 35	AD8	C	101	110	Right-handed alpha
Helix 36	AD9	C	140	156	Right-handed alpha
Helix 37	AE1	C	168	170	Right-handed 310
Helix 38	AE2	C	172	186	Right-handed alpha
Helix 39	AE3	C	212	216	Right-handed 310
Helix 40	AE4	C	229	246	Right-handed alpha
Helix 41	AE5	C	286	298	Right-handed alpha
Helix 42	AE6	C	302	327	Right-handed alpha
Helix 43	AE7	C	331	335	Right-handed 310
Helix 44	AE8	D	5	20	Right-handed alpha
Helix 45	AE9	D	42	48	Right-handed alpha
Helix 46	AF1	D	58	72	Right-handed alpha
Helix 47	AF2	D	82	88	Right-handed 310
Helix 48	AF3	D	89	95	Right-handed alpha
Helix 49	AF4	D	99	104	Right-handed alpha
Helix 50	AF5	D	125	129	Right-handed 310
Helix 51	AF6	D	132	138	Right-handed alpha
Helix 52	AF7	D	149	163	Right-handed alpha
Helix 53	AF8	D	172	177	Right-handed alpha
Helix 54	AF9	D	183	188	Right-handed alpha
Helix 55	AG1	D	214	228	Right-handed alpha
Helix 56	AG2	D	245	257	Right-handed alpha
Helix 57	AG3	D	270	282	Right-handed alpha
Helix 58	AG4	D	284	288	Right-handed 310
Helix 59	AG5	D	305	311	Right-handed alpha
Helix 60	AG6	D	315	327	Right-handed alpha
Helix 61	AG7	E	29	55	Right-handed alpha
Helix 62	AG8	E	68	78	Right-handed alpha
Helix 63	AG9	E	91	98	Right-handed alpha
Helix 64	AH1	E	101	110	Right-handed alpha
Helix 65	AH2	E	140	156	Right-handed alpha
Helix 66	AH3	E	168	170	Right-handed 310
Helix 67	AH4	E	172	186	Right-handed alpha
Helix 68	AH5	E	212	216	Right-handed 310
Helix 69	AH6	E	229	246	Right-handed alpha
Helix 70	AH7	E	278	285	Right-handed alpha
Helix 71	AH8	E	286	298	Right-handed alpha
Helix 72	AH9	E	302	327	Right-handed alpha
Helix 73	AI1	E	331	335	Right-handed 310
Helix 74	AI2	F	5	20	Right-handed alpha
Helix 75	AI3	F	42	48	Right-handed alpha
Helix 76	AI4	F	58	72	Right-handed alpha
Helix 77	AI5	F	82	88	Right-handed 310
Helix 78	AI6	F	89	95	Right-handed alpha
Helix 79	AI7	F	99	104	Right-handed alpha
Helix 80	AI8	F	125	129	Right-handed 310
Helix 81	AI9	F	132	138	Right-handed alpha
Helix 82	AJ1	F	149	163	Right-handed alpha
Helix 83	AJ2	F	183	188	Right-handed alpha
Helix 84	AJ3	F	214	228	Right-handed alpha
Helix 85	AJ4	F	245	257	Right-handed alpha
Helix 86	AJ5	F	270	282	Right-handed alpha
Helix 87	AJ6	F	284	288	Right-handed 310
Helix 88	AJ7	F	305	311	Right-handed alpha
Helix 89	AJ8	F	315	328	Right-handed alpha
Helix 90	AJ9	G	29	55	Right-handed alpha
Helix 91	AK1	G	68	78	Right-handed alpha
Helix 92	AK2	G	91	98	Right-handed alpha
Helix 93	AK3	G	101	110	Right-handed alpha
Helix 94	AK4	G	121	125	Right-handed 310
Helix 95	AK5	G	140	156	Right-handed alpha
Helix 96	AK6	G	168	170	Right-handed 310
Helix 97	AK7	G	172	185	Right-handed alpha
Helix 98	AK8	G	212	216	Right-handed 310
Helix 99	AK9	G	229	246	Right-handed alpha
Helix 100	AL1	G	286	298	Right-handed alpha
Helix 101	AL2	G	302	327	Right-handed alpha
Helix 102	AL3	G	331	335	Right-handed 310
Helix 103	AL4	H	5	20	Right-handed alpha
Helix 104	AL5	H	42	48	Right-handed alpha
Helix 105	AL6	H	58	72	Right-handed alpha
Helix 106	AL7	H	82	88	Right-handed 310
Helix 107	AL8	H	89	95	Right-handed alpha
Helix 108	AL9	H	99	104	Right-handed alpha
Helix 109	AM1	H	125	129	Right-handed 310
Helix 110	AM2	H	132	138	Right-handed alpha
Helix 111	AM3	H	149	163	Right-handed alpha
Helix 112	AM4	H	183	188	Right-handed alpha
Helix 113	AM5	H	214	228	Right-handed alpha
Helix 114	AM6	H	245	257	Right-handed alpha
Helix 115	AM7	H	270	282	Right-handed alpha
Helix 116	AM8	H	284	288	Right-handed 310
Helix 117	AM9	H	305	311	Right-handed alpha
Helix 118	AN1	H	315	328	Right-handed alpha

There are 24 sheets in PDB entry 6CER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	24	28	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	222	226	anti-parallel
Strand 3	A	251	257	parallel
Strand 4	A	189	196	parallel
Strand 5	A	161	166	parallel
Strand 6	A	84	86	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	349	first strand
Strand 2	A	356	359	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1	4	first strand
Strand 2	B	179	182	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	54	first strand
Strand 2	B	23	27	parallel
Strand 3	B	75	79	parallel
Strand 4	B	113	117	parallel
Strand 5	B	167	171	parallel
Strand 6	B	143	145	parallel
Strand 7	B	240	242	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	234	237	anti-parallel
Strand 3	B	208	211	parallel
Strand 4	B	259	262	parallel
Strand 5	B	293	295	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	24	28	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	222	226	anti-parallel
Strand 3	C	251	256	parallel
Strand 4	C	189	195	parallel
Strand 5	C	161	166	parallel
Strand 6	C	84	86	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	349	first strand
Strand 2	C	356	359	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1	4	first strand
Strand 2	D	179	182	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	54	first strand
Strand 2	D	23	27	parallel
Strand 3	D	75	79	parallel
Strand 4	D	113	117	parallel
Strand 5	D	167	171	parallel
Strand 6	D	143	145	parallel
Strand 7	D	240	242	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	202	first strand
Strand 2	D	233	237	anti-parallel
Strand 3	D	207	211	parallel
Strand 4	D	259	262	parallel
Strand 5	D	293	295	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	8	first strand
Strand 2	E	24	28	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	15	first strand
Strand 2	E	222	226	anti-parallel
Strand 3	E	251	256	parallel
Strand 4	E	189	195	parallel
Strand 5	E	161	166	parallel
Strand 6	E	84	86	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	346	349	first strand
Strand 2	E	356	359	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1	4	first strand
Strand 2	F	179	182	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	54	first strand
Strand 2	F	23	27	parallel
Strand 3	F	75	79	parallel
Strand 4	F	113	117	parallel
Strand 5	F	167	171	parallel
Strand 6	F	143	145	parallel
Strand 7	F	240	242	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	199	202	first strand
Strand 2	F	233	237	anti-parallel
Strand 3	F	207	211	parallel
Strand 4	F	259	262	parallel
Strand 5	F	293	295	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	8	first strand
Strand 2	G	24	28	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	13	15	first strand
Strand 2	G	222	226	anti-parallel
Strand 3	G	251	256	parallel
Strand 4	G	189	195	parallel
Strand 5	G	161	166	parallel
Strand 6	G	84	86	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	346	349	first strand
Strand 2	G	356	359	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	1	4	first strand
Strand 2	H	179	182	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	54	first strand
Strand 2	H	23	27	parallel
Strand 3	H	75	79	parallel
Strand 4	H	113	117	parallel
Strand 5	H	167	171	parallel
Strand 6	H	143	145	parallel
Strand 7	H	240	242	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	199	202	first strand
Strand 2	H	234	237	anti-parallel
Strand 3	H	208	211	parallel
Strand 4	H	259	262	parallel
Strand 5	H	293	295	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6CER

Analysis of interatomic Contacts of Structural Units in PDB entry:
6CER