Analysis of interatomic Contacts of Structural Units in PDB entry:
6CIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CIM entry

There are 10 chains in PDB entry 6CIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
HIS 395ASN 1007
B
MET 1CYS 350
C
LEU 396ASN 1007
D
MET 1SER 351
N
PHE 19ILE 159
F
T 6 C 40
I
G 7 A 16
L
C 17 A 41
G
G 3 G 54
J
C 4 C 55
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 6CIM. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
395 399Right-handed 310
Helix 2
AA2
A
400 423Right-handed alpha
Helix 3
AA3
A
426 442Right-handed alpha
Helix 4
AA4
A
444 457Right-handed alpha
Helix 5
AA5
A
463 475Right-handed alpha
Helix 6
AA6
A
477 493Right-handed alpha
Helix 7
AA7
A
499 511Right-handed alpha
Helix 8
AA8
A
558 570Right-handed alpha
Helix 9
AA9
A
570 581Right-handed alpha
Helix 10
AB1
A
664 683Right-handed alpha
Helix 11
AB2
A
708 716Right-handed alpha
Helix 12
AB3
A
733 740Right-handed alpha
Helix 13
AB4
A
749 763Right-handed alpha
Helix 14
AB5
A
768 777Right-handed alpha
Helix 15
AB6
A
792 813Right-handed alpha
Helix 16
AB7
A
822 841Right-handed alpha
Helix 17
AB8
A
850 858Right-handed alpha
Helix 18
AB9
A
859 868Right-handed alpha
Helix 19
AC1
A
872 895Right-handed alpha
Helix 20
AC2
A
897 902Right-handed alpha
Helix 21
AC3
A
902 923Right-handed alpha
Helix 22
AC4
A
933 942Right-handed alpha
Helix 23
AC5
A
942 951Right-handed alpha
Helix 24
AC6
A
953 957Right-handed 310
Helix 25
AC7
A
961 975Right-handed alpha
Helix 26
AC8
A
979 996Right-handed alpha
Helix 27
AC9
A
996 1004Right-handed alpha
Helix 28
AD1
B
11 15Right-handed 310
Helix 29
AD2
B
168 172Right-handed 310
Helix 30
AD3
B
308 314Right-handed alpha
Helix 31
AD4
C
400 408Right-handed alpha
Helix 32
AD5
C
408 424Right-handed alpha
Helix 33
AD6
C
426 442Right-handed alpha
Helix 34
AD7
C
444 457Right-handed alpha
Helix 35
AD8
C
463 474Right-handed alpha
Helix 36
AD9
C
477 493Right-handed alpha
Helix 37
AE1
C
499 511Right-handed alpha
Helix 38
AE2
C
558 570Right-handed alpha
Helix 39
AE3
C
570 581Right-handed alpha
Helix 40
AE4
C
664 683Right-handed alpha
Helix 41
AE5
C
708 716Right-handed alpha
Helix 42
AE6
C
733 741Right-handed alpha
Helix 43
AE7
C
749 763Right-handed alpha
Helix 44
AE8
C
768 777Right-handed alpha
Helix 45
AE9
C
792 814Right-handed alpha
Helix 46
AF1
C
815 818Right-handed 310
Helix 47
AF2
C
822 842Right-handed alpha
Helix 48
AF3
C
850 858Right-handed alpha
Helix 49
AF4
C
859 868Right-handed alpha
Helix 50
AF5
C
872 895Right-handed alpha
Helix 51
AF6
C
897 902Right-handed alpha
Helix 52
AF7
C
902 923Right-handed alpha
Helix 53
AF8
C
924 928Right-handed 310
Helix 54
AF9
C
933 942Right-handed alpha
Helix 55
AG1
C
942 951Right-handed alpha
Helix 56
AG2
C
962 976Right-handed alpha
Helix 57
AG3
C
982 995Right-handed alpha
Helix 58
AG4
C
996 1004Right-handed alpha
Helix 59
AG5
D
11 15Right-handed 310
Helix 60
AG6
D
168 172Right-handed 310
Helix 61
AG7
D
308 314Right-handed alpha
Helix 62
AG8
N
20 31Right-handed alpha
Helix 63
AG9
N
37 48Right-handed alpha
Helix 64
AH1
N
100 117Right-handed alpha
Helix 65
AH2
N
121 136Right-handed alpha
Helix 66
AH3
N
141 158Right-handed alpha
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There are 16 sheets in PDB entry 6CIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
517 520first strand
Strand 2
A
686 691anti-parallel
Strand 3
A
694 706anti-parallel
Strand 4
A
591 604parallel
Strand 5
A
618 632anti-parallel
Strand 6
A
653 658anti-parallel
Strand 7
A
554 557anti-parallel
Strand 8
A
534 536anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
517 520first strand
Strand 2
A
686 691anti-parallel
Strand 3
A
694 706anti-parallel
Strand 4
A
591 604parallel
Strand 5
A
618 632anti-parallel
Strand 6
A
637 642anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
20 24first strand
Strand 2
B
27 31anti-parallel
Strand 3
B
45 51anti-parallel
Strand 4
B
54 59anti-parallel
Strand 5
B
3 8parallel
Strand 6
B
343 349anti-parallel
Strand 7
B
326 332anti-parallel
Strand 8
B
318 321anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
61 62first strand
Strand 2
B
120 127parallel
Strand 3
B
107 115anti-parallel
Strand 4
B
90 94anti-parallel
Strand 5
B
76 80anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
130 131first strand
Strand 2
B
191 195parallel
Strand 3
B
182 186anti-parallel
Strand 4
B
150 156anti-parallel
Strand 5
B
141 147anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
159 161first strand
Strand 2
B
175 177anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
208 212first strand
Strand 2
B
215 219anti-parallel
Strand 3
B
233 239anti-parallel
Strand 4
B
246 252anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
262 267first strand
Strand 2
B
270 274anti-parallel
Strand 3
B
287 292anti-parallel
Strand 4
B
297 302anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
517 520first strand
Strand 2
C
686 691anti-parallel
Strand 3
C
694 706anti-parallel
Strand 4
C
591 604parallel
Strand 5
C
618 633anti-parallel
Strand 6
C
653 658anti-parallel
Strand 7
C
554 557anti-parallel
Strand 8
C
534 536anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
517 520first strand
Strand 2
C
686 691anti-parallel
Strand 3
C
694 706anti-parallel
Strand 4
C
591 604parallel
Strand 5
C
618 633anti-parallel
Strand 6
C
636 642anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
20 24first strand
Strand 2
D
27 31anti-parallel
Strand 3
D
45 51anti-parallel
Strand 4
D
54 59anti-parallel
Strand 5
D
3 8parallel
Strand 6
D
343 349anti-parallel
Strand 7
D
326 332anti-parallel
Strand 8
D
318 321anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
61 62first strand
Strand 2
D
119 127parallel
Strand 3
D
107 116anti-parallel
Strand 4
D
90 94anti-parallel
Strand 5
D
76 80anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
130 131first strand
Strand 2
D
191 195parallel
Strand 3
D
182 186anti-parallel
Strand 4
D
150 156anti-parallel
Strand 5
D
141 147anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
159 161first strand
Strand 2
D
175 177anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
208 212first strand
Strand 2
D
215 219anti-parallel
Strand 3
D
233 239anti-parallel
Strand 4
D
246 252anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
262 266first strand
Strand 2
D
270 274anti-parallel
Strand 3
D
287 291anti-parallel
Strand 4
D
298 302anti-parallel
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