Analysis of interatomic Contacts of Structural Units in PDB entry:
6CKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CKX entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 6CKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 722TYR 892
A
 ASN 894GLU 1024
B
 PRO 22SER 259
C
 ARG 722TYR 892
C
 ASN 894GLU 1024
D
 PRO 22SER 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 6CKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
723 725Right-handed 310
Helix 2
AA2
A
768 781Right-handed alpha
Helix 3
AA3
A
820 827Right-handed alpha
Helix 4
AA4
A
832 853Right-handed alpha
Helix 5
AA5
A
861 863Right-handed 310
Helix 6
AA6
A
898 902Right-handed 310
Helix 7
AA7
A
903 908Right-handed alpha
Helix 8
AA8
A
915 932Right-handed alpha
Helix 9
AA9
A
940 953Right-handed alpha
Helix 10
AB1
A
960 966Right-handed 310
Helix 11
AB2
A
981 986Right-handed alpha
Helix 12
AB3
A
990 1001Right-handed alpha
Helix 13
AB4
A
1010 1015Right-handed alpha
Helix 14
AB5
B
27 32Right-handed alpha
Helix 15
AB6
B
34 39Right-handed alpha
Helix 16
AB7
B
42 65Right-handed alpha
Helix 17
AB8
B
67 82Right-handed alpha
Helix 18
AB9
B
91 107Right-handed alpha
Helix 19
AC1
B
112 124Right-handed alpha
Helix 20
AC2
B
125 131Right-handed alpha
Helix 21
AC3
B
135 151Right-handed alpha
Helix 22
AC4
B
159 170Right-handed alpha
Helix 23
AC5
B
174 193Right-handed alpha
Helix 24
AC6
B
194 195Right-handed 310
Helix 25
AC7
B
196 200Right-handed 310
Helix 26
AC8
B
202 219Right-handed alpha
Helix 27
AC9
B
221 226Right-handed 310
Helix 28
AD1
B
233 238Right-handed 310
Helix 29
AD2
B
243 256Right-handed alpha
Helix 30
AD3
B
257 259Right-handed 310
Helix 31
AD4
C
723 725Right-handed 310
Helix 32
AD5
C
768 781Right-handed alpha
Helix 33
AD6
C
820 827Right-handed alpha
Helix 34
AD7
C
832 853Right-handed alpha
Helix 35
AD8
C
861 863Right-handed 310
Helix 36
AD9
C
898 902Right-handed 310
Helix 37
AE1
C
903 908Right-handed alpha
Helix 38
AE2
C
915 932Right-handed alpha
Helix 39
AE3
C
940 953Right-handed alpha
Helix 40
AE4
C
960 966Right-handed 310
Helix 41
AE5
C
981 986Right-handed alpha
Helix 42
AE6
C
990 1001Right-handed alpha
Helix 43
AE7
C
1010 1015Right-handed alpha
Helix 44
AE8
D
27 32Right-handed alpha
Helix 45
AE9
D
34 39Right-handed alpha
Helix 46
AF1
D
42 65Right-handed alpha
Helix 47
AF2
D
67 82Right-handed alpha
Helix 48
AF3
D
91 107Right-handed alpha
Helix 49
AF4
D
112 124Right-handed alpha
Helix 50
AF5
D
125 131Right-handed alpha
Helix 51
AF6
D
135 151Right-handed alpha
Helix 52
AF7
D
159 170Right-handed alpha
Helix 53
AF8
D
174 193Right-handed alpha
Helix 54
AF9
D
194 195Right-handed 310
Helix 55
AG1
D
196 200Right-handed 310
Helix 56
AG2
D
202 219Right-handed alpha
Helix 57
AG3
D
221 226Right-handed 310
Helix 58
AG4
D
233 238Right-handed 310
Helix 59
AG5
D
243 256Right-handed alpha
Helix 60
AG6
D
257 259Right-handed 310
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There are 6 sheets in PDB entry 6CKX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 735first strand
Strand 2
A
740 746anti-parallel
Strand 3
A
752 758anti-parallel
Strand 4
A
809 814anti-parallel
Strand 5
A
789 794anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
818 819first strand
Strand 2
A
865 867anti-parallel
Strand 3
A
873 875anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
855 856first strand
Strand 2
A
882 883anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
727 735first strand
Strand 2
C
740 746anti-parallel
Strand 3
C
752 758anti-parallel
Strand 4
C
809 814anti-parallel
Strand 5
C
789 794anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
818 819first strand
Strand 2
C
865 867anti-parallel
Strand 3
C
873 875anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
855 856first strand
Strand 2
C
882 883anti-parallel
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