Analysis of interatomic Contacts of Structural Units in PDB entry:
6CM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CM9 entry

There are 9 chains in PDB entry 6CM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
LYS 158PRO 167
T
THR 4GLY 16
B
GLU 14GLU 583
C
GLU 17LYS 181
G
PRO 4GLU 588
H
GLU 17ASN 179
M
SER 2GLN 423
S
MET 1GLN 142
N
SER 6LYS 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are105 helices in PDB entry 6CM9. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
B
15 22Right-handed alpha
Helix 2
AA2
B
26 41Right-handed alpha
Helix 3
AA3
B
47 49Right-handed 310
Helix 4
AA4
B
50 55Right-handed alpha
Helix 5
AA5
B
65 76Right-handed alpha
Helix 6
AA6
B
82 86Right-handed 310
Helix 7
AA7
B
87 95Right-handed alpha
Helix 8
AA8
B
99 111Right-handed alpha
Helix 9
AA9
B
122 131Right-handed alpha
Helix 10
AB1
B
134 152Right-handed alpha
Helix 11
AB2
B
152 160Right-handed alpha
Helix 12
AB3
B
161 167Right-handed alpha
Helix 13
AB4
B
174 191Right-handed alpha
Helix 14
AB5
B
200 209Right-handed alpha
Helix 15
AB6
B
217 222Right-handed alpha
Helix 16
AB7
B
234 245Right-handed alpha
Helix 17
AB8
B
246 250Right-handed 310
Helix 18
AB9
B
254 267Right-handed alpha
Helix 19
AC1
B
275 282Right-handed alpha
Helix 20
AC2
B
284 291Right-handed alpha
Helix 21
AC3
B
292 294Right-handed 310
Helix 22
AC4
B
297 310Right-handed alpha
Helix 23
AC5
B
316 320Right-handed 310
Helix 24
AC6
B
321 325Right-handed 310
Helix 25
AC7
B
331 345Right-handed alpha
Helix 26
AC8
B
347 349Right-handed 310
Helix 27
AC9
B
350 359Right-handed alpha
Helix 28
AD1
B
366 384Right-handed alpha
Helix 29
AD2
B
387 400Right-handed alpha
Helix 30
AD3
B
403 419Right-handed alpha
Helix 31
AD4
B
428 433Right-handed alpha
Helix 32
AD5
B
441 455Right-handed alpha
Helix 33
AD6
B
461 466Right-handed alpha
Helix 34
AD7
B
467 470Right-handed 310
Helix 35
AD8
B
472 476Right-handed 310
Helix 36
AD9
B
477 495Right-handed alpha
Helix 37
AE1
B
499 511Right-handed alpha
Helix 38
AE2
B
516 533Right-handed alpha
Helix 39
AE3
B
536 541Right-handed alpha
Helix 40
AE4
B
559 564Right-handed alpha
Helix 41
AE5
B
569 574Right-handed alpha
Helix 42
AE6
C
29 39Right-handed alpha
Helix 43
AE7
C
75 79Right-handed 310
Helix 44
AE8
C
96 111Right-handed alpha
Helix 45
AE9
C
137 144Right-handed alpha
Helix 46
AF1
C
165 178Right-handed alpha
Helix 47
AF2
G
6 16Right-handed alpha
Helix 48
AF3
G
19 40Right-handed alpha
Helix 49
AF4
G
45 59Right-handed alpha
Helix 50
AF5
G
67 75Right-handed alpha
Helix 51
AF6
G
78 93Right-handed alpha
Helix 52
AF7
G
99 102Right-handed 310
Helix 53
AF8
G
103 111Right-handed alpha
Helix 54
AF9
G
117 130Right-handed alpha
Helix 55
AG1
G
134 143Right-handed alpha
Helix 56
AG2
G
150 168Right-handed alpha
Helix 57
AG3
G
171 175Right-handed 310
Helix 58
AG4
G
187 205Right-handed alpha
Helix 59
AG5
G
208 213Right-handed alpha
Helix 60
AG6
G
215 229Right-handed alpha
Helix 61
AG7
G
242 256Right-handed alpha
Helix 62
AG8
G
261 267Right-handed alpha
Helix 63
AG9
G
267 275Right-handed alpha
Helix 64
AH1
G
282 299Right-handed alpha
Helix 65
AH2
G
302 318Right-handed alpha
Helix 66
AH3
G
321 335Right-handed alpha
Helix 67
AH4
G
343 345Right-handed 310
Helix 68
AH5
G
346 353Right-handed alpha
Helix 69
AH6
G
354 356Right-handed 310
Helix 70
AH7
G
358 373Right-handed alpha
Helix 71
AH8
G
377 391Right-handed alpha
Helix 72
AH9
G
396 411Right-handed alpha
Helix 73
AI1
G
415 429Right-handed alpha
Helix 74
AI2
G
436 448Right-handed alpha
Helix 75
AI3
G
452 464Right-handed alpha
Helix 76
AI4
G
469 488Right-handed alpha
Helix 77
AI5
G
503 515Right-handed alpha
Helix 78
AI6
G
521 533Right-handed alpha
Helix 79
AI7
G
543 551Right-handed alpha
Helix 80
AI8
G
556 573Right-handed alpha
Helix 81
AI9
G
577 581Right-handed 310
Helix 82
AJ1
H
29 38Right-handed alpha
Helix 83
AJ2
H
74 81Right-handed 310
Helix 84
AJ3
H
99 111Right-handed alpha
Helix 85
AJ4
H
135 144Right-handed alpha
Helix 86
AJ5
H
145 148Right-handed 310
Helix 87
AJ6
H
165 176Right-handed alpha
Helix 88
AJ7
M
26 31Right-handed 310
Helix 89
AJ8
M
32 42Right-handed alpha
Helix 90
AJ9
M
76 95Right-handed alpha
Helix 91
AK1
M
99 104Right-handed alpha
Helix 92
AK2
M
106 117Right-handed alpha
Helix 93
AK3
M
127 132Right-handed alpha
Helix 94
AK4
M
150 155Right-handed alpha
Helix 95
AK5
M
216 224Right-handed alpha
Helix 96
AK6
M
243 251Right-handed alpha
Helix 97
AK7
S
24 40Right-handed alpha
Helix 98
AK8
S
77 96Right-handed alpha
Helix 99
AK9
S
100 105Right-handed alpha
Helix 100
AL1
S
106 116Right-handed alpha
Helix 101
AL2
S
128 141Right-handed alpha
Helix 102
AL3
N
14 23Right-handed alpha
Helix 103
AL4
N
80 95Right-handed alpha
Helix 104
AL5
N
103 119Right-handed alpha
Helix 105
AL6
N
193 199Right-handed alpha
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There are 18 sheets in PDB entry 6CM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
19 22first strand
Strand 2
C
61 68parallel
Strand 3
C
51 58anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
90 91first strand
Strand 2
C
123 125parallel
Strand 3
C
155 157parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
236 237first strand
Strand 2
G
240 241anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
18 22first strand
Strand 2
H
61 68parallel
Strand 3
H
51 58anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
91 93first strand
Strand 2
H
124 126parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
17 20first strand
Strand 2
M
5 8anti-parallel
Strand 3
M
69 71anti-parallel
Strand 4
M
55 58anti-parallel
Strand 5
M
49 52anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
118 119first strand
Strand 2
M
122 123anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
193 194first strand
Strand 2
M
260 270anti-parallel
Strand 3
M
197 203anti-parallel
Strand 4
M
175 176anti-parallel
Strand 5
M
411 413parallel
Strand 6
M
382 383anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
235 238first strand
Strand 2
M
260 270anti-parallel
Strand 3
M
197 203anti-parallel
Strand 4
M
170 172anti-parallel
Strand 5
M
406 408parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
179 183first strand
Strand 2
M
415 420parallel
Strand 3
M
376 377anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
253 255first strand
Strand 2
M
210 213anti-parallel
Strand 3
M
394 395anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
277 280first strand
Strand 2
M
290 299anti-parallel
Strand 3
M
353 361anti-parallel
Strand 4
M
321 326anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
306 312first strand
Strand 2
M
340 349anti-parallel
Strand 3
M
332 335anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
385 386first strand
Strand 2
N
68 69anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
4 5first strand
Strand 2
S
18 19anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
49 51first strand
Strand 2
S
55 58anti-parallel
Strand 3
S
71 72anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
118 119first strand
Strand 2
S
122 123anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
101 102first strand
Strand 2
N
181 185anti-parallel
Strand 3
N
143 146anti-parallel
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