Analysis of interatomic Contacts of Structural Units in PDB entry:
6CMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CMO entry

There are 6 chains in PDB entry 6CMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
R
MET 1CYS 323
A
MET 1PHE 354
B
GLN 1ASN 340
G
ASN 5ARG 62
L
MET 5CYS 215
H
VAL 5CYS 234
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 6CMO. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
R
33 65Right-handed alpha
Helix 2
AA2
R
66 69Right-handed 310
Helix 3
AA3
R
70 101Right-handed alpha
Helix 4
AA4
R
106 141Right-handed alpha
Helix 5
AA5
R
149 173Right-handed alpha
Helix 6
AA6
R
200 238Right-handed alpha
Helix 7
AA7
R
240 278Right-handed alpha
Helix 8
AA8
R
289 308Right-handed alpha
Helix 9
AA9
R
310 323Right-handed alpha
Helix 10
AB1
A
2 32Right-handed alpha
Helix 11
AB2
A
42 53Right-handed alpha
Helix 12
AB3
A
62 90Right-handed alpha
Helix 13
AB4
A
100 113Right-handed alpha
Helix 14
AB5
A
120 132Right-handed alpha
Helix 15
AB6
A
133 143Right-handed alpha
Helix 16
AB7
A
144 146Right-handed 310
Helix 17
AB8
A
151 163Right-handed alpha
Helix 18
AB9
A
170 178Right-handed alpha
Helix 19
AC1
A
209 214Right-handed alpha
Helix 20
AC2
A
226 231Right-handed 310
Helix 21
AC3
A
241 255Right-handed alpha
Helix 22
AC4
A
256 260Right-handed 310
Helix 23
AC5
A
271 281Right-handed alpha
Helix 24
AC6
A
289 293Right-handed 310
Helix 25
AC7
A
298 310Right-handed alpha
Helix 26
AC8
A
327 351Right-handed alpha
Helix 27
AC9
B
2 25Right-handed alpha
Helix 28
AD1
B
29 36Right-handed alpha
Helix 29
AD2
G
6 24Right-handed alpha
Helix 30
AD3
G
29 47Right-handed alpha
Helix 31
AD4
L
122 129Right-handed alpha
Helix 32
AD5
L
184 189Right-handed alpha
Helix 33
AD6
H
90 94Right-handed 310
Helix 34
AD7
H
172 176Right-handed 310
Helix 35
AD8
H
203 208Right-handed 310
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There are 19 sheets in PDB entry 6CMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
179 181first strand
Strand 2
R
186 188anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 191first strand
Strand 2
A
194 199anti-parallel
Strand 3
A
34 40parallel
Strand 4
A
220 225parallel
Strand 5
A
263 268parallel
Strand 6
A
319 321parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 51first strand
Strand 2
B
336 340anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 320anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
88 94anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
102 105first strand
Strand 2
B
111 115anti-parallel
Strand 3
B
121 125anti-parallel
Strand 4
B
134 139anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
149 151first strand
Strand 2
B
156 160anti-parallel
Strand 3
B
166 170anti-parallel
Strand 4
B
176 180anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
187 192first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
208 212anti-parallel
Strand 4
B
221 222anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
232 234first strand
Strand 2
B
241 244anti-parallel
Strand 3
B
250 253anti-parallel
Strand 4
B
260 264anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
276 278first strand
Strand 2
B
284 287anti-parallel
Strand 3
B
294 298anti-parallel
Strand 4
B
304 308anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
20 25first strand
Strand 2
L
71 76anti-parallel
Strand 3
L
63 68anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
54 55first strand
Strand 2
L
46 50anti-parallel
Strand 3
L
34 39anti-parallel
Strand 4
L
86 91anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
115 118first strand
Strand 2
L
135 140anti-parallel
Strand 3
L
174 180anti-parallel
Strand 4
L
160 164anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
130 131first strand
Strand 2
L
182 183anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
149 151first strand
Strand 2
L
193 195anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
6 10first strand
Strand 2
H
21 28anti-parallel
Strand 3
H
81 86anti-parallel
Strand 4
H
72 76anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
13 15first strand
Strand 2
H
125 129parallel
Strand 3
H
95 102anti-parallel
Strand 4
H
36 42anti-parallel
Strand 5
H
48 55anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
13 15first strand
Strand 2
H
125 129parallel
Strand 3
H
95 102anti-parallel
Strand 4
H
120 121anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
138 141first strand
Strand 2
H
158 163anti-parallel
Strand 3
H
194 200anti-parallel
Strand 4
H
181 188anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
214 218first strand
Strand 2
H
223 227anti-parallel
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