Analysis of interatomic Contacts of Structural Units in PDB entry:
6CQ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CQ4 entry

There is 1 chain in PDB entry 6CQ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0THR 657
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6CQ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 56Right-handed alpha
Helix 2
AA2
A
56 61Right-handed alpha
Helix 3
AA3
A
93 99Right-handed alpha
Helix 4
AA4
A
100 104Right-handed 310
Helix 5
AA5
A
108 130Right-handed alpha
Helix 6
AA6
A
181 186Right-handed alpha
Helix 7
AA7
A
204 217Right-handed alpha
Helix 8
AA8
A
230 240Right-handed alpha
Helix 9
AA9
A
270 283Right-handed alpha
Helix 10
AB1
A
293 307Right-handed alpha
Helix 11
AB2
A
331 344Right-handed alpha
Helix 12
AB3
A
346 350Right-handed 310
Helix 13
AB4
A
366 370Right-handed 310
Helix 14
AB5
A
407 479Right-handed alpha
Helix 15
AB6
A
495 526Right-handed alpha
Helix 16
AB7
A
536 540Right-handed 310
Helix 17
AB8
A
547 572Right-handed alpha
Helix 18
AB9
A
576 603Right-handed alpha
Helix 19
AC1
A
604 644Right-handed alpha
Helix 20
AC2
A
644 649Right-handed alpha
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There are 4 sheets in PDB entry 6CQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 3first strand
Strand 2
A
7 17anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
34 40anti-parallel
Strand 5
A
82 86anti-parallel
Strand 6
A
70 75anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
151 155anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
247 249parallel
Strand 3
A
258 260anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 327first strand
Strand 2
A
308 315anti-parallel
Strand 3
A
379 382parallel
Strand 4
A
351 354anti-parallel
Strand 5
A
357 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il