Analysis of interatomic Contacts of Structural Units in PDB entry:
6CST


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6CST entry

There are 6 chains in PDB entry 6CST (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 16ASN 518
B
GLY 20ASN 518
C
A 5 C 13
D
T 2 T 14
P
A 5 C 13
T
T 2 T 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 6CST. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
32 45Right-handed alpha
Helix 2
AA2
A
47 74Right-handed alpha
Helix 3
AA3
A
75 96Right-handed alpha
Helix 4
AA4
A
110 120Right-handed alpha
Helix 5
AA5
A
121 124Right-handed 310
Helix 6
AA6
A
140 145Right-handed alpha
Helix 7
AA7
A
153 161Right-handed alpha
Helix 8
AA8
A
170 187Right-handed alpha
Helix 9
AA9
A
204 212Right-handed alpha
Helix 10
AB1
A
213 214Right-handed 310
Helix 11
AB2
A
215 218Right-handed 310
Helix 12
AB3
A
289 306Right-handed alpha
Helix 13
AB4
A
316 327Right-handed alpha
Helix 14
AB5
A
338 347Right-handed alpha
Helix 15
AB6
A
350 354Right-handed 310
Helix 16
AB7
A
358 368Right-handed alpha
Helix 17
AB8
A
372 379Right-handed alpha
Helix 18
AB9
A
379 387Right-handed alpha
Helix 19
AC1
A
388 400Right-handed alpha
Helix 20
AC2
A
427 449Right-handed alpha
Helix 21
AC3
A
480 500Right-handed alpha
Helix 22
AC4
B
32 45Right-handed alpha
Helix 23
AC5
B
47 74Right-handed alpha
Helix 24
AC6
B
75 96Right-handed alpha
Helix 25
AC7
B
110 119Right-handed alpha
Helix 26
AC8
B
120 124Right-handed 310
Helix 27
AC9
B
140 145Right-handed alpha
Helix 28
AD1
B
153 161Right-handed alpha
Helix 29
AD2
B
170 189Right-handed alpha
Helix 30
AD3
B
204 212Right-handed alpha
Helix 31
AD4
B
213 214Right-handed 310
Helix 32
AD5
B
215 218Right-handed 310
Helix 33
AD6
B
289 306Right-handed alpha
Helix 34
AD7
B
316 327Right-handed alpha
Helix 35
AD8
B
338 347Right-handed alpha
Helix 36
AD9
B
350 354Right-handed 310
Helix 37
AE1
B
358 368Right-handed alpha
Helix 38
AE2
B
372 379Right-handed alpha
Helix 39
AE3
B
379 387Right-handed alpha
Helix 40
AE4
B
388 400Right-handed alpha
Helix 41
AE5
B
427 449Right-handed alpha
Helix 42
AE6
B
480 500Right-handed alpha
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There are 8 sheets in PDB entry 6CST. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
193 194first strand
Strand 2
A
199 203anti-parallel
Strand 3
A
103 108anti-parallel
Strand 4
A
309 314anti-parallel
Strand 5
A
332 334parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
136 139first strand
Strand 2
A
128 131anti-parallel
Strand 3
A
165 167parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
220 222first strand
Strand 2
A
283 285anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
415 425first strand
Strand 2
A
506 514anti-parallel
Strand 3
A
453 462anti-parallel
Strand 4
A
467 478anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
193 194first strand
Strand 2
B
199 203anti-parallel
Strand 3
B
103 108anti-parallel
Strand 4
B
309 314anti-parallel
Strand 5
B
332 334parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
135 139first strand
Strand 2
B
128 132anti-parallel
Strand 3
B
165 167parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
220 222first strand
Strand 2
B
283 285anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
415 425first strand
Strand 2
B
506 514anti-parallel
Strand 3
B
453 462anti-parallel
Strand 4
B
467 478anti-parallel
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