Analysis of interatomic Contacts of Structural Units in PDB entry:
6D06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D06 entry

There are 5 chains in PDB entry 6D06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 317	THR 700
B	G 1	U 12
B	G 14	G 23
C	C 1	C 23
D	LEU 319	THR 700

There are 30 helices in PDB entry 6D06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	319	339	Right-handed alpha
Helix 2	AA2	A	344	348	Right-handed 310
Helix 3	AA3	A	362	366	Right-handed 310
Helix 4	AA4	A	379	383	Right-handed 310
Helix 5	AA5	A	394	417	Right-handed alpha
Helix 6	AA6	A	419	423	Right-handed 310
Helix 7	AA7	A	494	496	Right-handed 310
Helix 8	AA8	A	501	508	Right-handed alpha
Helix 9	AA9	A	515	527	Right-handed alpha
Helix 10	AB1	A	529	535	Right-handed alpha
Helix 11	AB2	A	552	561	Right-handed alpha
Helix 12	AB3	A	562	565	Right-handed 310
Helix 13	AB4	A	628	642	Right-handed alpha
Helix 14	AB5	A	643	648	Right-handed 310
Helix 15	AB6	A	657	664	Right-handed alpha
Helix 16	AB7	A	665	682	Right-handed alpha
Helix 17	AB8	A	691	696	Right-handed 310
Helix 18	AB9	D	320	338	Right-handed alpha
Helix 19	AC1	D	379	383	Right-handed 310
Helix 20	AC2	D	394	417	Right-handed alpha
Helix 21	AC3	D	418	423	Right-handed 310
Helix 22	AC4	D	452	456	Right-handed 310
Helix 23	AC5	D	515	524	Right-handed alpha
Helix 24	AC6	D	529	537	Right-handed alpha
Helix 25	AC7	D	552	561	Right-handed alpha
Helix 26	AC8	D	562	565	Right-handed 310
Helix 27	AC9	D	628	643	Right-handed alpha
Helix 28	AD1	D	644	648	Right-handed 310
Helix 29	AD2	D	657	665	Right-handed alpha
Helix 30	AD3	D	665	681	Right-handed alpha

There are 6 sheets in PDB entry 6D06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	583	first strand
Strand 2	A	542	547	parallel
Strand 3	A	441	446	parallel
Strand 4	A	352	358	anti-parallel
Strand 5	A	367	373	anti-parallel
Strand 6	A	598	603	anti-parallel
Strand 7	A	610	613	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	428	first strand
Strand 2	A	434	436	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	492	first strand
Strand 2	A	481	484	anti-parallel
Strand 3	A	512	514	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	580	583	first strand
Strand 2	D	542	547	parallel
Strand 3	D	441	446	parallel
Strand 4	D	352	358	anti-parallel
Strand 5	D	366	373	anti-parallel
Strand 6	D	598	603	anti-parallel
Strand 7	D	610	613	anti-parallel
Strand 8	D	618	619	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	426	428	first strand
Strand 2	D	434	436	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	481	483	first strand
Strand 2	D	490	492	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D06

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D06