Analysis of interatomic Contacts of Structural Units in PDB entry:
6D1U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D1U entry

There are 3 chains in PDB entry 6D1U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 5	VAL 2129
B	GLU 5	VAL 2129
C	LYS 3	TRP 160

There are 75 helices in PDB entry 6D1U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	34	Right-handed alpha
Helix 2	AA2	A	44	54	Right-handed alpha
Helix 3	AA3	A	68	75	Right-handed alpha
Helix 4	AA4	A	84	89	Right-handed alpha
Helix 5	AA5	A	92	99	Right-handed alpha
Helix 6	AA6	A	133	143	Right-handed alpha
Helix 7	AA7	A	155	158	Right-handed 310
Helix 8	AA8	A	159	166	Right-handed alpha
Helix 9	AA9	A	187	203	Right-handed alpha
Helix 10	AB1	A	211	221	Right-handed alpha
Helix 11	AB2	A	230	232	Right-handed 310
Helix 12	AB3	A	233	241	Right-handed alpha
Helix 13	AB4	A	274	285	Right-handed alpha
Helix 14	AB5	A	288	299	Right-handed alpha
Helix 15	AB6	A	306	314	Right-handed alpha
Helix 16	AB7	A	316	329	Right-handed alpha
Helix 17	AB8	A	337	354	Right-handed alpha
Helix 18	AB9	A	358	372	Right-handed alpha
Helix 19	AC1	A	1025	1028	Right-handed 310
Helix 20	AC2	A	1029	1052	Right-handed alpha
Helix 21	AC3	A	1053	1056	Right-handed 310
Helix 22	AC4	A	1058	1080	Right-handed alpha
Helix 23	AC5	A	1086	1101	Right-handed alpha
Helix 24	AC6	A	2036	2055	Right-handed alpha
Helix 25	AC7	A	2124	2129	Right-handed 310
Helix 26	AC8	B	18	34	Right-handed alpha
Helix 27	AC9	B	44	54	Right-handed alpha
Helix 28	AD1	B	68	75	Right-handed alpha
Helix 29	AD2	B	84	89	Right-handed alpha
Helix 30	AD3	B	92	99	Right-handed alpha
Helix 31	AD4	B	133	143	Right-handed alpha
Helix 32	AD5	B	155	158	Right-handed 310
Helix 33	AD6	B	159	166	Right-handed alpha
Helix 34	AD7	B	187	203	Right-handed alpha
Helix 35	AD8	B	211	221	Right-handed alpha
Helix 36	AD9	B	230	232	Right-handed 310
Helix 37	AE1	B	233	241	Right-handed alpha
Helix 38	AE2	B	274	285	Right-handed alpha
Helix 39	AE3	B	288	299	Right-handed alpha
Helix 40	AE4	B	306	314	Right-handed alpha
Helix 41	AE5	B	316	329	Right-handed alpha
Helix 42	AE6	B	337	354	Right-handed alpha
Helix 43	AE7	B	358	372	Right-handed alpha
Helix 44	AE8	B	1025	1028	Right-handed 310
Helix 45	AE9	B	1029	1052	Right-handed alpha
Helix 46	AF1	B	1053	1056	Right-handed 310
Helix 47	AF2	B	1058	1080	Right-handed alpha
Helix 48	AF3	B	1086	1101	Right-handed alpha
Helix 49	AF4	B	2036	2055	Right-handed alpha
Helix 50	AF5	B	2124	2129	Right-handed 310
Helix 51	AF6	C	18	34	Right-handed alpha
Helix 52	AF7	C	44	54	Right-handed alpha
Helix 53	AF8	C	68	75	Right-handed alpha
Helix 54	AF9	C	84	89	Right-handed alpha
Helix 55	AG1	C	92	99	Right-handed alpha
Helix 56	AG2	C	133	143	Right-handed alpha
Helix 57	AG3	C	155	158	Right-handed 310
Helix 58	AG4	C	159	166	Right-handed alpha
Helix 59	AG5	C	187	203	Right-handed alpha
Helix 60	AG6	C	211	221	Right-handed alpha
Helix 61	AG7	C	230	232	Right-handed 310
Helix 62	AG8	C	233	241	Right-handed alpha
Helix 63	AG9	C	274	285	Right-handed alpha
Helix 64	AH1	C	288	299	Right-handed alpha
Helix 65	AH2	C	306	314	Right-handed alpha
Helix 66	AH3	C	316	329	Right-handed alpha
Helix 67	AH4	C	337	354	Right-handed alpha
Helix 68	AH5	C	358	371	Right-handed alpha
Helix 69	AH6	C	1031	1052	Right-handed alpha
Helix 70	AH7	C	1053	1056	Right-handed 310
Helix 71	AH8	C	1058	1080	Right-handed alpha
Helix 72	AH9	C	1086	1101	Right-handed alpha
Helix 73	AI1	C	2036	2055	Right-handed alpha
Helix 74	AI2	C	2124	2127	Right-handed 310
Helix 75	AI3	C	2128	2148	Right-handed alpha

There are 24 sheets in PDB entry 6D1U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	9	12	parallel
Strand 3	A	61	65	parallel
Strand 4	A	260	268	anti-parallel
Strand 5	A	108	113	anti-parallel
Strand 6	A	303	304	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	9	12	parallel
Strand 3	A	61	65	parallel
Strand 4	A	260	268	anti-parallel
Strand 5	A	330	331	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	101	first strand
Strand 2	A	104	105	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	149	first strand
Strand 2	A	224	229	parallel
Strand 3	A	116	120	anti-parallel
Strand 4	A	244	247	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	174	first strand
Strand 2	A	177	184	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2064	2065	first strand
Strand 2	A	2078	2079	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2068	2069	first strand
Strand 2	A	2074	2075	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2082	2087	first strand
Strand 2	A	2100	2105	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	9	12	parallel
Strand 3	B	61	65	parallel
Strand 4	B	260	268	anti-parallel
Strand 5	B	108	113	anti-parallel
Strand 6	B	303	304	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	9	12	parallel
Strand 3	B	61	65	parallel
Strand 4	B	260	268	anti-parallel
Strand 5	B	330	331	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	104	105	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	149	first strand
Strand 2	B	224	229	parallel
Strand 3	B	116	120	anti-parallel
Strand 4	B	244	247	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	174	first strand
Strand 2	B	177	184	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2064	2065	first strand
Strand 2	B	2078	2079	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2068	2069	first strand
Strand 2	B	2074	2075	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2082	2087	first strand
Strand 2	B	2100	2105	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	9	12	parallel
Strand 3	C	61	65	parallel
Strand 4	C	260	268	anti-parallel
Strand 5	C	108	113	anti-parallel
Strand 6	C	303	304	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	40	first strand
Strand 2	C	9	12	parallel
Strand 3	C	61	65	parallel
Strand 4	C	260	268	anti-parallel
Strand 5	C	330	331	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	101	first strand
Strand 2	C	104	105	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	149	first strand
Strand 2	C	224	229	parallel
Strand 3	C	116	120	anti-parallel
Strand 4	C	244	247	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	174	first strand
Strand 2	C	177	184	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2064	2065	first strand
Strand 2	C	2078	2079	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2068	2069	first strand
Strand 2	C	2074	2075	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2082	2087	first strand
Strand 2	C	2100	2105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D1U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D1U