Analysis of interatomic Contacts of Structural Units in PDB entry:
6D27


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D27 entry

There are 2 chains in PDB entry 6D27 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 5THR 2307
A
 PRO 2309LEU 2327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6D27. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 18Right-handed alpha
Helix 2
AA2
A
32 60Right-handed alpha
Helix 3
AA3
A
65 93Right-handed alpha
Helix 4
AA4
A
101 135Right-handed alpha
Helix 5
AA5
A
135 143Right-handed alpha
Helix 6
AA6
A
144 163Right-handed alpha
Helix 7
AA7
A
163 169Right-handed alpha
Helix 8
AA8
A
194 214Right-handed alpha
Helix 9
AA9
A
215 1242Right-handed alpha
Helix 10
AB1
A
1271 1282Right-handed alpha
Helix 11
AB2
A
1285 1292Right-handed alpha
Helix 12
AB3
A
1293 1313Right-handed alpha
Helix 13
AB4
A
1315 1324Right-handed alpha
Helix 14
AB5
A
1326 1336Right-handed alpha
Helix 15
AB6
A
1337 1343Right-handed alpha
Helix 16
AB7
A
1343 1357Right-handed alpha
Helix 17
AB8
A
1361 2240Right-handed 310
Helix 18
AB9
A
2244 2259Right-handed alpha
Helix 19
AC1
A
2259 2272Right-handed alpha
Helix 20
AC2
A
2273 2274Right-handed 310
Helix 21
AC3
A
2275 2277Right-handed 310
Helix 22
AC4
A
2278 2295Right-handed alpha
Helix 23
AC5
A
2295 2307Right-handed alpha
Helix 24
AC6
A
2308 2327Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6D27.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
180 184anti-parallel
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