Analysis of interatomic Contacts of Structural Units in PDB entry:
6D2P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D2P entry

There are 3 chains in PDB entry 6D2P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 1	PHE 169
H	GLN 1	SER 220
L	SER 3	GLU 213

There are 12 helices in PDB entry 6D2P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	12	16	Right-handed 310
Helix 2	AA2	C	44	50	Right-handed alpha
Helix 3	AA3	C	109	128	Right-handed alpha
Helix 4	AA4	C	141	146	Right-handed alpha
Helix 5	AA5	H	28	32	Right-handed 310
Helix 6	AA6	H	87	91	Right-handed 310
Helix 7	AA7	H	161	163	Right-handed 310
Helix 8	AA8	H	190	195	Right-handed 310
Helix 9	AA9	H	206	209	Right-handed 310
Helix 10	AB1	L	82	86	Right-handed 310
Helix 11	AB2	L	124	130	Right-handed alpha
Helix 12	AB3	L	184	189	Right-handed alpha

There are 13 sheets in PDB entry 6D2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	17	26	anti-parallel
Strand 3	C	87	99	anti-parallel
Strand 4	C	104	108	anti-parallel
Strand 5	C	2	8	anti-parallel
Strand 6	C	155	158	anti-parallel
Strand 7	C	147	150	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	76	first strand
Strand 2	C	87	99	anti-parallel
Strand 3	C	17	26	anti-parallel
Strand 4	C	35	40	anti-parallel
Strand 5	C	131	134	parallel
Strand 6	C	166	168	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	141	150	anti-parallel
Strand 3	H	181	189	anti-parallel
Strand 4	H	168	170	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	141	150	anti-parallel
Strand 3	H	181	189	anti-parallel
Strand 4	H	174	175	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	200	205	anti-parallel
Strand 3	H	210	215	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	73	78	anti-parallel
Strand 4	L	65	70	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	104	108	parallel
Strand 3	L	88	93	anti-parallel
Strand 4	L	37	41	anti-parallel
Strand 5	L	48	51	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	104	108	parallel
Strand 3	L	88	93	anti-parallel
Strand 4	L	99	100	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	121	first strand
Strand 2	L	133	142	anti-parallel
Strand 3	L	175	183	anti-parallel
Strand 4	L	162	164	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	117	121	first strand
Strand 2	L	133	142	anti-parallel
Strand 3	L	175	183	anti-parallel
Strand 4	L	168	169	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	156	158	first strand
Strand 2	L	147	153	anti-parallel
Strand 3	L	194	200	anti-parallel
Strand 4	L	203	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D2P

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D2P