Analysis of interatomic Contacts of Structural Units in PDB entry:
6D6R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D6R entry

There are 15 chains in PDB entry 6D6R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1SER 287
B
LEU 3GLY 243
C
GLU 9MET 273
D
CYS 26SER 233
E
THR 5LEU 290
F
GLY 3ALA 270
G
ALA 17SER 275
H
MET 1GLY 293
I
VAL 5ARG 187
J
PRO 630ASP 640
K
MET 1GLU 929
L
ARG 5ALA 93
M
MET 96LEU 1042
N
A 1 A 13
O
T 4 A 62
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are106 helices in PDB entry 6D6R. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
7 20Right-handed alpha
Helix 2
AA2
A
67 71Right-handed 310
Helix 3
AA3
A
95 112Right-handed alpha
Helix 4
AA4
A
145 159Right-handed alpha
Helix 5
AA5
A
200 203Right-handed 310
Helix 6
AA6
A
210 216Right-handed alpha
Helix 7
AA7
A
243 277Right-handed alpha
Helix 8
AA8
B
78 82Right-handed 310
Helix 9
AA9
B
94 110Right-handed alpha
Helix 10
AB1
B
111 115Right-handed 310
Helix 11
AB2
B
132 148Right-handed alpha
Helix 12
AB3
B
173 179Right-handed alpha
Helix 13
AB4
B
208 243Right-handed alpha
Helix 14
AB5
C
10 20Right-handed alpha
Helix 15
AB6
C
100 116Right-handed alpha
Helix 16
AB7
C
120 125Right-handed 310
Helix 17
AB8
C
147 163Right-handed alpha
Helix 18
AB9
C
211 217Right-handed alpha
Helix 19
AC1
C
245 272Right-handed alpha
Helix 20
AC2
D
89 106Right-handed alpha
Helix 21
AC3
D
129 144Right-handed alpha
Helix 22
AC4
D
170 176Right-handed alpha
Helix 23
AC5
D
202 232Right-handed alpha
Helix 24
AC6
E
8 21Right-handed alpha
Helix 25
AC7
E
98 112Right-handed alpha
Helix 26
AC8
E
120 123Right-handed 310
Helix 27
AC9
E
147 162Right-handed alpha
Helix 28
AD1
E
215 220Right-handed alpha
Helix 29
AD2
E
250 281Right-handed alpha
Helix 30
AD3
E
282 285Right-handed 310
Helix 31
AD4
F
17 21Right-handed 310
Helix 32
AD5
F
118 131Right-handed alpha
Helix 33
AD6
F
157 173Right-handed alpha
Helix 34
AD7
F
200 206Right-handed alpha
Helix 35
AD8
F
233 270Right-handed alpha
Helix 36
AD9
G
203 211Right-handed alpha
Helix 37
AE1
G
216 225Right-handed alpha
Helix 38
AE2
G
244 257Right-handed alpha
Helix 39
AE3
G
261 274Right-handed alpha
Helix 40
AE4
H
12 16Right-handed 310
Helix 41
AE5
H
124 134Right-handed alpha
Helix 42
AE6
H
175 179Right-handed 310
Helix 43
AE7
H
227 247Right-handed alpha
Helix 44
AE8
H
252 263Right-handed alpha
Helix 45
AE9
H
273 293Right-handed alpha
Helix 46
AF1
I
16 20Right-handed 310
Helix 47
AF2
I
57 61Right-handed 310
Helix 48
AF3
I
117 122Right-handed alpha
Helix 49
AF4
K
69 76Right-handed alpha
Helix 50
AF5
K
76 82Right-handed alpha
Helix 51
AF6
K
92 102Right-handed alpha
Helix 52
AF7
K
102 114Right-handed alpha
Helix 53
AF8
K
140 164Right-handed alpha
Helix 54
AF9
K
177 187Right-handed alpha
Helix 55
AG1
K
194 201Right-handed alpha
Helix 56
AG2
K
205 210Right-handed alpha
Helix 57
AG3
K
233 244Right-handed alpha
Helix 58
AG4
K
425 437Right-handed alpha
Helix 59
AG5
K
445 452Right-handed alpha
Helix 60
AG6
K
508 513Right-handed alpha
Helix 61
AG7
K
517 526Right-handed alpha
Helix 62
AG8
K
541 547Right-handed alpha
Helix 63
AG9
K
589 599Right-handed alpha
Helix 64
AH1
K
606 627Right-handed alpha
Helix 65
AH2
K
657 682Right-handed alpha
Helix 66
AH3
K
699 709Right-handed alpha
Helix 67
AH4
K
717 726Right-handed alpha
Helix 68
AH5
K
736 746Right-handed alpha
Helix 69
AH6
K
782 796Right-handed alpha
Helix 70
AH7
K
801 805Right-handed 310
Helix 71
AH8
K
806 843Right-handed alpha
Helix 72
AH9
L
10 15Right-handed alpha
Helix 73
AI1
L
16 21Right-handed alpha
Helix 74
AI2
L
63 68Right-handed alpha
Helix 75
AI3
L
81 92Right-handed alpha
Helix 76
AI4
M
141 153Right-handed alpha
Helix 77
AI5
M
168 181Right-handed alpha
Helix 78
AI6
M
192 207Right-handed alpha
Helix 79
AI7
M
229 239Right-handed alpha
Helix 80
AI8
M
254 259Right-handed 310
Helix 81
AI9
M
262 273Right-handed alpha
Helix 82
AJ1
M
288 301Right-handed alpha
Helix 83
AJ2
M
339 354Right-handed alpha
Helix 84
AJ3
M
373 384Right-handed alpha
Helix 85
AJ4
M
396 407Right-handed alpha
Helix 86
AJ5
M
414 429Right-handed alpha
Helix 87
AJ6
M
438 451Right-handed alpha
Helix 88
AJ7
M
460 474Right-handed alpha
Helix 89
AJ8
M
483 488Right-handed alpha
Helix 90
AJ9
M
513 522Right-handed alpha
Helix 91
AK1
M
544 553Right-handed alpha
Helix 92
AK2
M
566 575Right-handed alpha
Helix 93
AK3
M
580 588Right-handed alpha
Helix 94
AK4
M
588 593Right-handed alpha
Helix 95
AK5
M
598 609Right-handed alpha
Helix 96
AK6
M
832 840Right-handed alpha
Helix 97
AK7
M
847 861Right-handed alpha
Helix 98
AK8
M
871 878Right-handed alpha
Helix 99
AK9
M
884 893Right-handed alpha
Helix 100
AL1
M
901 914Right-handed alpha
Helix 101
AL2
M
925 949Right-handed alpha
Helix 102
AL3
M
954 961Right-handed alpha
Helix 103
AL4
M
966 975Right-handed alpha
Helix 104
AL5
M
978 982Right-handed 310
Helix 105
AL6
M
989 1015Right-handed alpha
Helix 106
AL7
M
1017 1031Right-handed alpha
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There are 48 sheets in PDB entry 6D6R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
76 82first strand
Strand 2
A
129 138parallel
Strand 3
A
53 64anti-parallel
Strand 4
A
45 50anti-parallel
Strand 5
A
35 39anti-parallel
Strand 6
A
284 286anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
161 162first strand
Strand 2
A
183 184anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
165 168first strand
Strand 2
A
171 174anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
204 207first strand
Strand 2
A
192 199anti-parallel
Strand 3
A
219 225anti-parallel
Strand 4
A
230 237anti-parallel
Strand 5
B
194 205anti-parallel
Strand 6
B
183 189anti-parallel
Strand 7
B
157 164anti-parallel
Strand 8
B
167 170anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
24 27first strand
Strand 2
B
37 42anti-parallel
Strand 3
B
46 55anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
70 74parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
35 39first strand
Strand 2
C
47 53anti-parallel
Strand 3
C
56 67anti-parallel
Strand 4
C
132 143anti-parallel
Strand 5
C
78 84parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
164 171first strand
Strand 2
C
176 186anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
206 208first strand
Strand 2
C
194 200anti-parallel
Strand 3
C
220 227anti-parallel
Strand 4
C
231 236anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
31 35first strand
Strand 2
D
43 49anti-parallel
Strand 3
D
52 62anti-parallel
Strand 4
D
115 124anti-parallel
Strand 5
D
75 81parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
165 167first strand
Strand 2
D
152 159anti-parallel
Strand 3
D
179 186anti-parallel
Strand 4
D
192 199anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
78 84first strand
Strand 2
E
131 141parallel
Strand 3
E
125 127anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
78 84first strand
Strand 2
E
131 141parallel
Strand 3
E
56 67anti-parallel
Strand 4
E
47 53anti-parallel
Strand 5
E
35 39anti-parallel
Strand 6
H
5 6parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
165 166first strand
Strand 2
E
189 190anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
168 171first strand
Strand 2
E
179 182anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
209 211first strand
Strand 2
E
199 206anti-parallel
Strand 3
E
224 230anti-parallel
Strand 4
E
236 242anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
39 43first strand
Strand 2
F
51 57anti-parallel
Strand 3
F
60 67anti-parallel
Strand 4
F
143 152anti-parallel
Strand 5
F
95 99parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
195 197first strand
Strand 2
F
181 187anti-parallel
Strand 3
F
209 216anti-parallel
Strand 4
F
221 222anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
195 197first strand
Strand 2
F
181 187anti-parallel
Strand 3
F
209 216anti-parallel
Strand 4
F
226 229anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
27 28first strand
Strand 2
G
84 89anti-parallel
Strand 3
G
99 102anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
33 34first strand
Strand 2
G
77 80anti-parallel
Strand 3
G
71 74anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
65 67first strand
Strand 2
L
58 60parallel
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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
191 192first strand
Strand 2
G
162 169anti-parallel
Strand 3
G
177 179anti-parallel
Strand 4
G
139 140parallel
Strand 5
G
128 132anti-parallel
Strand 6
G
116 125anti-parallel
Strand 7
G
162 169anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
198 201first strand
Strand 2
G
236 240anti-parallel
Strand 3
G
227 232anti-parallel
Strand 4
L
75 77anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
26 27first strand
Strand 2
H
58 62anti-parallel
Strand 3
H
66 71anti-parallel
Strand 4
H
40 41parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
45 47first strand
Strand 2
H
52 54anti-parallel
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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
164 165first strand
Strand 2
H
140 148anti-parallel
Strand 3
H
154 157anti-parallel
Strand 4
H
106 109parallel
Strand 5
H
95 99anti-parallel
Strand 6
H
83 91anti-parallel
Strand 7
H
140 148anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
170 173first strand
Strand 2
H
202 206anti-parallel
Strand 3
H
193 197anti-parallel
Strand 4
H
186 189anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
21 24first strand
Strand 2
I
51 56parallel
Strand 3
I
40 45anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
26 29first strand
Strand 2
I
32 35anti-parallel
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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
93 94first strand
Strand 2
I
83 90anti-parallel
Strand 3
I
71 78anti-parallel
Strand 4
I
127 134anti-parallel
Strand 5
I
152 155anti-parallel
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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
93 94first strand
Strand 2
I
83 90anti-parallel
Strand 3
I
100 103anti-parallel
Strand 4
I
142 145parallel
Strand 5
I
127 134anti-parallel
Strand 6
I
152 155anti-parallel
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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
165 168first strand
Strand 2
I
171 173anti-parallel
Strand 3
I
180 181anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
2 10first strand
Strand 2
K
16 24anti-parallel
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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
87 90first strand
Strand 2
K
119 122parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
174 175first strand
Strand 2
K
192 193parallel
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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
274 277first strand
Strand 2
K
261 265anti-parallel
Strand 3
K
247 252anti-parallel
Strand 4
K
291 296anti-parallel
Strand 5
K
343 350anti-parallel
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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
383 385first strand
Strand 2
K
371 375anti-parallel
Strand 3
K
356 361anti-parallel
Strand 4
K
396 402anti-parallel
Strand 5
K
414 422anti-parallel
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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
468 469first strand
Strand 2
K
574 582parallel
Strand 3
K
557 566anti-parallel
Strand 4
K
500 506anti-parallel
Strand 5
K
489 494anti-parallel
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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
477 478first strand
Strand 2
K
587 588parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
530 531first strand
Strand 2
K
536 537anti-parallel
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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
637 638first strand
Strand 2
K
652 653anti-parallel
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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
688 690first strand
Strand 2
K
752 754anti-parallel
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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
846 848first strand
Strand 2
K
908 911anti-parallel
Strand 3
K
925 928anti-parallel
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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
851 852first strand
Strand 2
K
862 864anti-parallel
Strand 3
K
869 871anti-parallel
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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
886 888first strand
Strand 2
K
893 895anti-parallel
Strand 3
K
900 901anti-parallel
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There are 9 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
99 103first strand
Strand 2
M
111 117anti-parallel
Strand 3
M
304 309anti-parallel
Strand 4
M
156 161parallel
Strand 5
M
278 283parallel
Strand 6
M
246 252parallel
Strand 7
M
184 188parallel
Strand 8
M
224 227parallel
Strand 9
M
210 212parallel
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There are 7 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
329 332first strand
Strand 2
M
316 322anti-parallel
Strand 3
M
533 539parallel
Strand 4
M
495 498parallel
Strand 5
M
389 392parallel
Strand 6
M
478 481parallel
Strand 7
M
452 455parallel
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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
864 865first strand
Strand 2
M
869 870anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il