Analysis of interatomic Contacts of Structural Units in PDB entry:
6D6U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6D6U entry

There are 9 chains in PDB entry 6D6U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 8	VAL 340
B	ASP 10	LEU 345
C	ASN 8	VAL 340
D	ASP 10	ARG 347
E	GLY 25	LEU 355
I	ASN 1	LYS 106
J	VAL 2	SER 117
L	ASN 1	LYS 106
K	GLN 3	THR 118

There are 47 helices in PDB entry 6D6U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	20	Right-handed alpha
Helix 2	AA2	A	86	90	Right-handed 310
Helix 3	AA3	A	170	173	Right-handed 310
Helix 4	AA4	A	217	226	Right-handed alpha
Helix 5	AA5	A	226	236	Right-handed alpha
Helix 6	AA6	A	237	241	Right-handed 310
Helix 7	AA7	A	247	272	Right-handed alpha
Helix 8	AA8	A	280	309	Right-handed alpha
Helix 9	AA9	A	309	340	Right-handed alpha
Helix 10	AB1	B	11	22	Right-handed alpha
Helix 11	AB2	B	72	76	Right-handed 310
Helix 12	AB3	B	89	93	Right-handed 310
Helix 13	AB4	B	174	179	Right-handed alpha
Helix 14	AB5	B	223	230	Right-handed alpha
Helix 15	AB6	B	230	241	Right-handed alpha
Helix 16	AB7	B	242	247	Right-handed alpha
Helix 17	AB8	B	251	277	Right-handed alpha
Helix 18	AB9	B	286	311	Right-handed alpha
Helix 19	AC1	B	314	345	Right-handed alpha
Helix 20	AC2	C	9	20	Right-handed alpha
Helix 21	AC3	C	86	90	Right-handed 310
Helix 22	AC4	C	218	226	Right-handed alpha
Helix 23	AC5	C	226	239	Right-handed alpha
Helix 24	AC6	C	246	272	Right-handed alpha
Helix 25	AC7	C	279	306	Right-handed alpha
Helix 26	AC8	C	309	339	Right-handed alpha
Helix 27	AC9	D	12	23	Right-handed alpha
Helix 28	AD1	D	88	93	Right-handed 310
Helix 29	AD2	D	142	146	Right-handed 310
Helix 30	AD3	D	174	178	Right-handed 310
Helix 31	AD4	D	223	230	Right-handed alpha
Helix 32	AD5	D	230	242	Right-handed alpha
Helix 33	AD6	D	243	247	Right-handed 310
Helix 34	AD7	D	251	275	Right-handed alpha
Helix 35	AD8	D	284	314	Right-handed alpha
Helix 36	AD9	D	314	346	Right-handed alpha
Helix 37	AE1	E	26	36	Right-handed alpha
Helix 38	AE2	E	99	103	Right-handed 310
Helix 39	AE3	E	192	196	Right-handed 310
Helix 40	AE4	E	241	252	Right-handed alpha
Helix 41	AE5	E	253	255	Right-handed 310
Helix 42	AE6	E	261	284	Right-handed alpha
Helix 43	AE7	E	294	320	Right-handed alpha
Helix 44	AE8	E	324	355	Right-handed alpha
Helix 45	AE9	J	28	32	Right-handed 310
Helix 46	AF1	J	87	91	Right-handed 310
Helix 47	AF2	K	28	32	Right-handed 310

There are 32 sheets in PDB entry 6D6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	106	first strand
Strand 2	A	123	135	anti-parallel
Strand 3	A	56	68	anti-parallel
Strand 4	A	36	50	anti-parallel
Strand 5	A	164	168	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	123	135	anti-parallel
Strand 3	A	56	68	anti-parallel
Strand 4	A	36	50	anti-parallel
Strand 5	A	175	176	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	98	first strand
Strand 2	A	147	155	anti-parallel
Strand 3	A	204	216	anti-parallel
Strand 4	A	186	199	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	69	first strand
Strand 2	B	39	44	anti-parallel
Strand 3	B	167	171	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	47	first strand
Strand 2	B	180	181	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	64	first strand
Strand 2	B	133	138	anti-parallel
Strand 3	B	108	109	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	118	122	anti-parallel
Strand 3	B	129	130	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	B	150	158	anti-parallel
Strand 3	B	209	221	anti-parallel
Strand 4	B	191	204	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	83	first strand
Strand 2	C	115	117	anti-parallel
Strand 3	C	123	127	anti-parallel
Strand 4	C	56	68	anti-parallel
Strand 5	C	36	51	anti-parallel
Strand 6	C	164	168	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	104	first strand
Strand 2	C	130	134	anti-parallel
Strand 3	C	56	68	anti-parallel
Strand 4	C	36	51	anti-parallel
Strand 5	C	175	176	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	98	first strand
Strand 2	C	147	156	anti-parallel
Strand 3	C	204	216	anti-parallel
Strand 4	C	186	199	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	117	122	anti-parallel
Strand 3	D	127	131	anti-parallel
Strand 4	D	67	69	anti-parallel
Strand 5	D	39	44	anti-parallel
Strand 6	D	167	171	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	47	first strand
Strand 2	D	180	181	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	53	first strand
Strand 2	D	59	64	anti-parallel
Strand 3	D	133	138	anti-parallel
Strand 4	D	108	109	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	152	159	anti-parallel
Strand 3	D	209	221	anti-parallel
Strand 4	D	191	198	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	99	101	first strand
Strand 2	D	152	159	anti-parallel
Strand 3	D	209	221	anti-parallel
Strand 4	D	202	204	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	129	133	anti-parallel
Strand 3	E	139	144	anti-parallel
Strand 4	E	72	82	anti-parallel
Strand 5	E	147	149	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	129	133	anti-parallel
Strand 3	E	139	144	anti-parallel
Strand 4	E	72	82	anti-parallel
Strand 5	E	51	62	anti-parallel
Strand 6	E	179	189	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	113	first strand
Strand 2	E	169	170	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	167	first strand
Strand 2	E	219	231	anti-parallel
Strand 3	E	201	203	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	167	first strand
Strand 2	E	219	231	anti-parallel
Strand 3	E	207	214	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	71	75	anti-parallel
Strand 4	I	62	66	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	101	105	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	48	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	101	105	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	96	97	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	6	first strand
Strand 2	J	18	24	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	112	116	parallel
Strand 3	J	92	98	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	46	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	63	66	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	49	first strand
Strand 2	L	33	38	anti-parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	49	first strand
Strand 2	L	33	38	anti-parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	101	102	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	6	first strand
Strand 2	K	19	24	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	112	116	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	34	39	anti-parallel
Strand 5	K	45	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	112	116	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	105	108	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6D6U

Analysis of interatomic Contacts of Structural Units in PDB entry:
6D6U