Analysis of interatomic Contacts of Structural Units in PDB entry:
6D9H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6D9H entry

There are 4 chains in PDB entry 6D9H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 11PHE 355
B
GLU 3ASN 340
G
THR 6ARG 62
R
ILE 5LYS 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6D9H. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
11 32Right-handed alpha
Helix 2
AA2
A
45 53Right-handed alpha
Helix 3
AA3
A
208 213Right-handed alpha
Helix 4
AA4
A
214 217Right-handed 310
Helix 5
AA5
A
229 232Right-handed 310
Helix 6
AA6
A
242 256Right-handed alpha
Helix 7
AA7
A
257 261Right-handed 310
Helix 8
AA8
A
271 282Right-handed alpha
Helix 9
AA9
A
296 311Right-handed alpha
Helix 10
AB1
A
330 353Right-handed alpha
Helix 11
AB2
B
4 26Right-handed alpha
Helix 12
AB3
B
29 34Right-handed alpha
Helix 13
AB4
B
35 37Right-handed 310
Helix 14
AB5
G
7 24Right-handed alpha
Helix 15
AB6
G
29 44Right-handed alpha
Helix 16
AB7
R
6 37Right-handed alpha
Helix 17
AB8
R
42 72Right-handed alpha
Helix 18
AB9
R
77 111Right-handed alpha
Helix 19
AC1
R
114 119Right-handed alpha
Helix 20
AC2
R
120 141Right-handed alpha
Helix 21
AC3
R
148 160Right-handed alpha
Helix 22
AC4
R
170 175Right-handed alpha
Helix 23
AC5
R
176 182Right-handed alpha
Helix 24
AC6
R
182 189Right-handed alpha
Helix 25
AC7
R
189 213Right-handed alpha
Helix 26
AC8
R
224 260Right-handed alpha
Helix 27
AC9
R
266 289Right-handed alpha
Helix 28
AD1
R
292 301Right-handed alpha
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There are 9 sheets in PDB entry 6D9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 192first strand
Strand 2
A
195 201anti-parallel
Strand 3
A
34 39parallel
Strand 4
A
221 227parallel
Strand 5
A
264 270parallel
Strand 6
A
320 324parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
46 51first strand
Strand 2
B
336 340anti-parallel
Strand 3
B
327 331anti-parallel
Strand 4
B
315 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
58 63first strand
Strand 2
B
69 74anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
88 94anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
100 105first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
121 125anti-parallel
Strand 4
B
135 139anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
149 151first strand
Strand 2
B
156 159anti-parallel
Strand 3
B
165 170anti-parallel
Strand 4
B
176 181anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
187 192first strand
Strand 2
B
198 203anti-parallel
Strand 3
B
208 212anti-parallel
Strand 4
B
218 222anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
229 234first strand
Strand 2
B
240 245anti-parallel
Strand 3
B
250 254anti-parallel
Strand 4
B
260 264anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
273 278first strand
Strand 2
B
284 289anti-parallel
Strand 3
B
294 298anti-parallel
Strand 4
B
304 308anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
74 76first strand
Strand 2
R
166 168anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il