Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DBL entry

There are 8 chains in PDB entry 6DBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 408LYS 1029
B
MET 1GLN 351
C
GLY 408LYS 1029
D
MET 1GLN 351
E
G 1 G 50
F
C 1 C 50
G
G 1 G 61
H
C 1 C 61
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6DBL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
419 427Right-handed alpha
Helix 2
AA2
A
427 442Right-handed alpha
Helix 3
AA3
A
445 460Right-handed alpha
Helix 4
AA4
A
463 474Right-handed alpha
Helix 5
AA5
A
482 493Right-handed alpha
Helix 6
AA6
A
496 510Right-handed alpha
Helix 7
AA7
A
519 524Right-handed alpha
Helix 8
AA8
A
577 601Right-handed alpha
Helix 9
AA9
A
670 674Right-handed 310
Helix 10
AB1
A
686 705Right-handed alpha
Helix 11
AB2
A
730 737Right-handed alpha
Helix 12
AB3
A
757 762Right-handed alpha
Helix 13
AB4
A
771 785Right-handed alpha
Helix 14
AB5
A
790 798Right-handed alpha
Helix 15
AB6
A
815 835Right-handed alpha
Helix 16
AB7
A
844 862Right-handed alpha
Helix 17
AB8
A
872 880Right-handed alpha
Helix 18
AB9
A
881 890Right-handed alpha
Helix 19
AC1
A
894 912Right-handed alpha
Helix 20
AC2
A
912 917Right-handed alpha
Helix 21
AC3
A
919 924Right-handed alpha
Helix 22
AC4
A
924 930Right-handed alpha
Helix 23
AC5
A
930 946Right-handed alpha
Helix 24
AC6
A
955 964Right-handed alpha
Helix 25
AC7
A
964 973Right-handed alpha
Helix 26
AC8
A
980 994Right-handed alpha
Helix 27
AC9
A
1001 1018Right-handed alpha
Helix 28
AD1
A
1019 1027Right-handed alpha
Helix 29
AD2
B
308 314Right-handed alpha
Helix 30
AD3
C
419 443Right-handed alpha
Helix 31
AD4
C
445 459Right-handed alpha
Helix 32
AD5
C
463 474Right-handed alpha
Helix 33
AD6
C
482 493Right-handed alpha
Helix 34
AD7
C
496 510Right-handed alpha
Helix 35
AD8
C
518 523Right-handed alpha
Helix 36
AD9
C
577 589Right-handed alpha
Helix 37
AE1
C
589 600Right-handed alpha
Helix 38
AE2
C
686 705Right-handed alpha
Helix 39
AE3
C
730 737Right-handed alpha
Helix 40
AE4
C
755 762Right-handed alpha
Helix 41
AE5
C
771 785Right-handed alpha
Helix 42
AE6
C
790 799Right-handed alpha
Helix 43
AE7
C
814 835Right-handed alpha
Helix 44
AE8
C
844 862Right-handed alpha
Helix 45
AE9
C
872 880Right-handed alpha
Helix 46
AF1
C
881 890Right-handed alpha
Helix 47
AF2
C
894 917Right-handed alpha
Helix 48
AF3
C
919 924Right-handed alpha
Helix 49
AF4
C
924 930Right-handed alpha
Helix 50
AF5
C
930 946Right-handed alpha
Helix 51
AF6
C
955 964Right-handed alpha
Helix 52
AF7
C
964 972Right-handed alpha
Helix 53
AF8
C
980 997Right-handed alpha
Helix 54
AF9
C
1001 1017Right-handed alpha
Helix 55
AG1
C
1018 1027Right-handed alpha
Helix 56
AG2
D
308 313Right-handed alpha
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There are 19 sheets in PDB entry 6DBL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
536 539first strand
Strand 2
A
708 713anti-parallel
Strand 3
A
716 728anti-parallel
Strand 4
A
611 622parallel
Strand 5
A
639 651anti-parallel
Strand 6
A
675 680anti-parallel
Strand 7
A
573 576anti-parallel
Strand 8
A
553 554anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
536 539first strand
Strand 2
A
708 713anti-parallel
Strand 3
A
716 728anti-parallel
Strand 4
A
611 622parallel
Strand 5
A
639 651anti-parallel
Strand 6
A
660 664anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 6first strand
Strand 2
B
343 349anti-parallel
Strand 3
B
326 332anti-parallel
Strand 4
B
318 323anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
20 23first strand
Strand 2
B
28 31anti-parallel
Strand 3
B
45 51anti-parallel
Strand 4
B
54 59anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
61 62first strand
Strand 2
B
120 127parallel
Strand 3
B
106 114anti-parallel
Strand 4
B
89 93anti-parallel
Strand 5
B
76 80anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 97first strand
Strand 2
B
101 102anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
141 147first strand
Strand 2
B
150 156anti-parallel
Strand 3
B
181 185anti-parallel
Strand 4
B
192 196anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
159 161first strand
Strand 2
B
175 177anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
209 212first strand
Strand 2
B
215 218anti-parallel
Strand 3
B
234 239anti-parallel
Strand 4
B
246 251anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
263 265first strand
Strand 2
B
270 273anti-parallel
Strand 3
B
287 292anti-parallel
Strand 4
B
297 302anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
536 539first strand
Strand 2
C
708 713anti-parallel
Strand 3
C
716 726anti-parallel
Strand 4
C
611 622parallel
Strand 5
C
639 651anti-parallel
Strand 6
C
675 680anti-parallel
Strand 7
C
573 576anti-parallel
Strand 8
C
553 555anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
536 539first strand
Strand 2
C
708 713anti-parallel
Strand 3
C
716 726anti-parallel
Strand 4
C
611 622parallel
Strand 5
C
639 651anti-parallel
Strand 6
C
660 664anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
2 6first strand
Strand 2
D
343 349anti-parallel
Strand 3
D
326 332anti-parallel
Strand 4
D
318 323anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
20 23first strand
Strand 2
D
28 31anti-parallel
Strand 3
D
46 51anti-parallel
Strand 4
D
54 59anti-parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
61 62first strand
Strand 2
D
120 127parallel
Strand 3
D
106 114anti-parallel
Strand 4
D
89 93anti-parallel
Strand 5
D
76 80anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
141 147first strand
Strand 2
D
150 156anti-parallel
Strand 3
D
182 185anti-parallel
Strand 4
D
192 195anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
159 161first strand
Strand 2
D
175 177anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
209 212first strand
Strand 2
D
215 218anti-parallel
Strand 3
D
234 241anti-parallel
Strand 4
D
244 251anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
263 265first strand
Strand 2
D
271 273anti-parallel
Strand 3
D
287 292anti-parallel
Strand 4
D
297 302anti-parallel
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