Analysis of interatomic Contacts of Structural Units in PDB entry:
6DBV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DBV entry

There are 8 chains in PDB entry 6DBV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 408LYS 1029
B
MET 1GLN 351
C
GLY 408HIS 1028
D
MET 1GLN 351
E
G 1 G 50
F
C 1 C 50
G
G 1 G 61
H
C 1 C 61
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 6DBV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
419 442Right-handed alpha
Helix 2
AA2
A
446 460Right-handed alpha
Helix 3
AA3
A
463 474Right-handed alpha
Helix 4
AA4
A
482 492Right-handed alpha
Helix 5
AA5
A
496 510Right-handed alpha
Helix 6
AA6
A
518 523Right-handed alpha
Helix 7
AA7
A
577 600Right-handed alpha
Helix 8
AA8
A
670 674Right-handed 310
Helix 9
AA9
A
686 705Right-handed alpha
Helix 10
AB1
A
730 739Right-handed alpha
Helix 11
AB2
A
757 762Right-handed alpha
Helix 12
AB3
A
771 785Right-handed alpha
Helix 13
AB4
A
790 798Right-handed alpha
Helix 14
AB5
A
815 835Right-handed alpha
Helix 15
AB6
A
844 862Right-handed alpha
Helix 16
AB7
A
872 879Right-handed alpha
Helix 17
AB8
A
881 890Right-handed alpha
Helix 18
AB9
A
894 912Right-handed alpha
Helix 19
AC1
A
912 917Right-handed alpha
Helix 20
AC2
A
919 924Right-handed alpha
Helix 21
AC3
A
924 930Right-handed alpha
Helix 22
AC4
A
930 947Right-handed alpha
Helix 23
AC5
A
955 964Right-handed alpha
Helix 24
AC6
A
964 972Right-handed alpha
Helix 25
AC7
A
980 987Right-handed alpha
Helix 26
AC8
A
987 997Right-handed alpha
Helix 27
AC9
A
1001 1018Right-handed alpha
Helix 28
AD1
A
1018 1027Right-handed alpha
Helix 29
AD2
B
163 167Right-handed 310
Helix 30
AD3
B
168 172Right-handed 310
Helix 31
AD4
B
308 313Right-handed alpha
Helix 32
AD5
C
419 441Right-handed alpha
Helix 33
AD6
C
445 459Right-handed alpha
Helix 34
AD7
C
460 462Right-handed 310
Helix 35
AD8
C
463 473Right-handed alpha
Helix 36
AD9
C
482 492Right-handed alpha
Helix 37
AE1
C
496 511Right-handed alpha
Helix 38
AE2
C
518 527Right-handed alpha
Helix 39
AE3
C
577 600Right-handed alpha
Helix 40
AE4
C
670 674Right-handed 310
Helix 41
AE5
C
686 703Right-handed alpha
Helix 42
AE6
C
730 737Right-handed alpha
Helix 43
AE7
C
755 762Right-handed alpha
Helix 44
AE8
C
771 785Right-handed alpha
Helix 45
AE9
C
790 799Right-handed alpha
Helix 46
AF1
C
819 835Right-handed alpha
Helix 47
AF2
C
844 863Right-handed alpha
Helix 48
AF3
C
872 880Right-handed alpha
Helix 49
AF4
C
881 889Right-handed alpha
Helix 50
AF5
C
894 917Right-handed alpha
Helix 51
AF6
C
924 930Right-handed alpha
Helix 52
AF7
C
930 946Right-handed alpha
Helix 53
AF8
C
955 972Right-handed alpha
Helix 54
AF9
C
975 979Right-handed 310
Helix 55
AG1
C
980 998Right-handed alpha
Helix 56
AG2
C
1001 1017Right-handed alpha
Helix 57
AG3
C
1018 1024Right-handed alpha
Helix 58
AG4
D
308 314Right-handed alpha
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There are 18 sheets in PDB entry 6DBV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
536 539first strand
Strand 2
A
708 713anti-parallel
Strand 3
A
716 728anti-parallel
Strand 4
A
611 622parallel
Strand 5
A
639 651anti-parallel
Strand 6
A
675 680anti-parallel
Strand 7
A
573 575anti-parallel
Strand 8
A
554 555anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
536 539first strand
Strand 2
A
708 713anti-parallel
Strand 3
A
716 728anti-parallel
Strand 4
A
611 622parallel
Strand 5
A
639 651anti-parallel
Strand 6
A
660 664anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2 5first strand
Strand 2
B
343 349anti-parallel
Strand 3
B
326 332anti-parallel
Strand 4
B
318 323anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
7 8first strand
Strand 2
B
54 59parallel
Strand 3
B
45 51anti-parallel
Strand 4
B
28 31anti-parallel
Strand 5
B
20 23anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
76 78first strand
Strand 2
B
90 93anti-parallel
Strand 3
B
107 111anti-parallel
Strand 4
B
122 126anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 97first strand
Strand 2
B
101 102anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
141 147first strand
Strand 2
B
150 156anti-parallel
Strand 3
B
181 185anti-parallel
Strand 4
B
192 196anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
159 160first strand
Strand 2
B
176 177anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
209 212first strand
Strand 2
B
215 218anti-parallel
Strand 3
B
234 240anti-parallel
Strand 4
B
245 251anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
263 265first strand
Strand 2
B
271 273anti-parallel
Strand 3
B
288 292anti-parallel
Strand 4
B
297 300anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
537 539first strand
Strand 2
C
708 713anti-parallel
Strand 3
C
716 724anti-parallel
Strand 4
C
611 622parallel
Strand 5
C
639 651anti-parallel
Strand 6
C
675 680anti-parallel
Strand 7
C
573 575anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
537 539first strand
Strand 2
C
708 713anti-parallel
Strand 3
C
716 724anti-parallel
Strand 4
C
611 622parallel
Strand 5
C
639 651anti-parallel
Strand 6
C
663 664anti-parallel
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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
20 23first strand
Strand 2
D
28 31anti-parallel
Strand 3
D
46 51anti-parallel
Strand 4
D
54 59anti-parallel
Strand 5
D
2 8parallel
Strand 6
D
343 349anti-parallel
Strand 7
D
326 332anti-parallel
Strand 8
D
318 323anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
76 80first strand
Strand 2
D
89 93anti-parallel
Strand 3
D
106 114anti-parallel
Strand 4
D
120 127anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
141 147first strand
Strand 2
D
150 156anti-parallel
Strand 3
D
182 185anti-parallel
Strand 4
D
193 195anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
159 160first strand
Strand 2
D
176 177anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
209 212first strand
Strand 2
D
215 218anti-parallel
Strand 3
D
234 241anti-parallel
Strand 4
D
244 251anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
263 265first strand
Strand 2
D
270 273anti-parallel
Strand 3
D
288 293anti-parallel
Strand 4
D
296 300anti-parallel
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