Analysis of interatomic Contacts of Structural Units in PDB entry:
6DC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DC6 entry

There are 3 chains in PDB entry 6DC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 49ILE 1057
B
MET 1GLY 76
C
ASP 49VAL 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 6DC6. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
55 72Right-handed alpha
Helix 2
AA2
A
81 95Right-handed alpha
Helix 3
AA3
A
108 112Right-handed 310
Helix 4
AA4
A
126 131Right-handed alpha
Helix 5
AA5
A
131 136Right-handed alpha
Helix 6
AA6
A
155 159Right-handed 310
Helix 7
AA7
A
168 183Right-handed alpha
Helix 8
AA8
A
305 312Right-handed alpha
Helix 9
AA9
A
319 323Right-handed 310
Helix 10
AB1
A
324 343Right-handed alpha
Helix 11
AB2
A
352 368Right-handed alpha
Helix 12
AB3
A
379 389Right-handed alpha
Helix 13
AB4
A
394 413Right-handed alpha
Helix 14
AB5
A
429 432Right-handed 310
Helix 15
AB6
A
451 456Right-handed alpha
Helix 16
AB7
A
459 468Right-handed alpha
Helix 17
AB8
A
477 491Right-handed alpha
Helix 18
AB9
A
509 515Right-handed 310
Helix 19
AC1
A
527 540Right-handed alpha
Helix 20
AC2
A
554 558Right-handed 310
Helix 21
AC3
A
561 567Right-handed alpha
Helix 22
AC4
A
577 591Right-handed alpha
Helix 23
AC5
A
617 621Right-handed 310
Helix 24
AC6
A
631 636Right-handed alpha
Helix 25
AC7
A
640 656Right-handed alpha
Helix 26
AC8
A
656 669Right-handed alpha
Helix 27
AC9
A
671 679Right-handed alpha
Helix 28
AD1
A
683 696Right-handed alpha
Helix 29
AD2
A
702 719Right-handed alpha
Helix 30
AD3
A
719 729Right-handed alpha
Helix 31
AD4
A
758 777Right-handed alpha
Helix 32
AD5
A
783 792Right-handed alpha
Helix 33
AD6
A
822 833Right-handed alpha
Helix 34
AD7
A
857 873Right-handed alpha
Helix 35
AD8
A
879 888Right-handed alpha
Helix 36
AD9
A
894 913Right-handed alpha
Helix 37
AE1
A
971 982Right-handed alpha
Helix 38
AE2
A
1003 1012Right-handed alpha
Helix 39
AE3
A
1014 1023Right-handed alpha
Helix 40
AE4
B
22 32Right-handed alpha
Helix 41
AE5
B
37 41Right-handed 310
Helix 42
AE6
C
55 72Right-handed alpha
Helix 43
AE7
C
82 95Right-handed alpha
Helix 44
AE8
C
126 131Right-handed alpha
Helix 45
AE9
C
131 136Right-handed alpha
Helix 46
AF1
C
152 157Right-handed alpha
Helix 47
AF2
C
168 182Right-handed alpha
Helix 48
AF3
C
258 262Right-handed 310
Helix 49
AF4
C
305 312Right-handed alpha
Helix 50
AF5
C
324 343Right-handed alpha
Helix 51
AF6
C
351 368Right-handed alpha
Helix 52
AF7
C
379 389Right-handed alpha
Helix 53
AF8
C
394 413Right-handed alpha
Helix 54
AF9
C
429 432Right-handed 310
Helix 55
AG1
C
433 437Right-handed 310
Helix 56
AG2
C
439 444Right-handed alpha
Helix 57
AG3
C
451 456Right-handed alpha
Helix 58
AG4
C
459 468Right-handed alpha
Helix 59
AG5
C
477 491Right-handed alpha
Helix 60
AG6
C
509 515Right-handed 310
Helix 61
AG7
C
527 540Right-handed alpha
Helix 62
AG8
C
554 558Right-handed 310
Helix 63
AG9
C
561 567Right-handed alpha
Helix 64
AH1
C
577 591Right-handed alpha
Helix 65
AH2
C
617 621Right-handed 310
Helix 66
AH3
C
631 636Right-handed alpha
Helix 67
AH4
C
640 656Right-handed alpha
Helix 68
AH5
C
656 669Right-handed alpha
Helix 69
AH6
C
671 677Right-handed alpha
Helix 70
AH7
C
681 696Right-handed alpha
Helix 71
AH8
C
702 719Right-handed alpha
Helix 72
AH9
C
719 729Right-handed alpha
Helix 73
AI1
C
758 777Right-handed alpha
Helix 74
AI2
C
783 792Right-handed alpha
Helix 75
AI3
C
817 833Right-handed alpha
Helix 76
AI4
C
857 873Right-handed alpha
Helix 77
AI5
C
879 888Right-handed alpha
Helix 78
AI6
C
894 915Right-handed alpha
Helix 79
AI7
C
971 982Right-handed alpha
Helix 80
AI8
C
1003 1012Right-handed alpha
Helix 81
AI9
C
1014 1023Right-handed alpha
Helix 82
AJ1
D
22 32Right-handed alpha
Helix 83
AJ2
D
37 41Right-handed 310
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There are 16 sheets in PDB entry 6DC6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
144 145first strand
Strand 2
A
98 102parallel
Strand 3
A
74 78parallel
Strand 4
A
161 165parallel
Strand 5
A
185 192parallel
Strand 6
A
195 201anti-parallel
Strand 7
A
423 427anti-parallel
Strand 8
A
315 316parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
206 208first strand
Strand 2
A
299 301anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
265 266first strand
Strand 2
A
247 251anti-parallel
Strand 3
A
291 295anti-parallel
Strand 4
A
218 224anti-parallel
Strand 5
A
229 234anti-parallel
Strand 6
A
274 279anti-parallel
Strand 7
A
268 269anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
545 548first strand
Strand 2
A
499 503parallel
Strand 3
A
470 474parallel
Strand 4
A
570 573parallel
Strand 5
A
595 601parallel
Strand 6
A
604 610anti-parallel
Strand 7
A
924 928anti-parallel
Strand 8
A
933 937anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
944 947first strand
Strand 2
A
950 953anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
957 961first strand
Strand 2
A
1052 1056parallel
Strand 3
A
1035 1041anti-parallel
Strand 4
A
986 992anti-parallel
Strand 5
A
995 999anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
957 961first strand
Strand 2
A
1052 1056parallel
Strand 3
A
1035 1041anti-parallel
Strand 4
A
1047 1049anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 7anti-parallel
Strand 3
B
66 70parallel
Strand 4
B
42 45anti-parallel
Strand 5
B
48 49anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
144 145first strand
Strand 2
C
98 102parallel
Strand 3
C
74 78parallel
Strand 4
C
161 165parallel
Strand 5
C
185 192parallel
Strand 6
C
195 201anti-parallel
Strand 7
C
423 427anti-parallel
Strand 8
C
315 317parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
206 208first strand
Strand 2
C
299 301anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
265 266first strand
Strand 2
C
247 251anti-parallel
Strand 3
C
291 295anti-parallel
Strand 4
C
218 224anti-parallel
Strand 5
C
231 234anti-parallel
Strand 6
C
274 276anti-parallel
Strand 7
C
268 269anti-parallel
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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
545 548first strand
Strand 2
C
499 503parallel
Strand 3
C
470 474parallel
Strand 4
C
570 573parallel
Strand 5
C
595 601parallel
Strand 6
C
604 610anti-parallel
Strand 7
C
924 928anti-parallel
Strand 8
C
933 937anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
944 946first strand
Strand 2
C
951 953anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
958 961first strand
Strand 2
C
1053 1056parallel
Strand 3
C
1033 1041anti-parallel
Strand 4
C
986 992anti-parallel
Strand 5
C
995 999anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
958 961first strand
Strand 2
C
1053 1056parallel
Strand 3
C
1033 1041anti-parallel
Strand 4
C
1047 1048anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
65 70parallel
Strand 4
D
42 45anti-parallel
Strand 5
D
48 49anti-parallel
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