Analysis of interatomic Contacts of Structural Units in PDB entry:
6DF3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DF3 entry

There are 3 chains in PDB entry 6DF3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	LEU 24	GLY 229
C	GLN 52	LEU 206
H	LEU 35	VAL 224

There are 15 helices in PDB entry 6DF3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	114	119	Right-handed alpha
Helix 2	AA2	L	156	160	Right-handed alpha
Helix 3	AA3	L	206	209	Right-handed 310
Helix 4	AA4	C	65	84	Right-handed alpha
Helix 5	AA5	C	93	98	Right-handed alpha
Helix 6	AA6	C	101	119	Right-handed alpha
Helix 7	AA7	C	119	128	Right-handed alpha
Helix 8	AA8	C	130	150	Right-handed alpha
Helix 9	AA9	C	156	158	Right-handed 310
Helix 10	AB1	C	159	179	Right-handed alpha
Helix 11	AB2	C	181	192	Right-handed alpha
Helix 12	AB3	C	192	201	Right-handed alpha
Helix 13	AB4	H	72	79	Right-handed alpha
Helix 14	AB5	H	100	103	Right-handed 310
Helix 15	AB6	H	134	136	Right-handed 310

There are 12 sheets in PDB entry 6DF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	26	33	first strand
Strand 2	L	36	42	anti-parallel
Strand 3	L	78	80	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	66	67	first strand
Strand 2	L	51	59	anti-parallel
Strand 3	L	92	100	anti-parallel
Strand 4	L	106	109	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	126	130	first strand
Strand 2	L	135	139	anti-parallel
Strand 3	L	185	188	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	143	147	first strand
Strand 2	L	153	155	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	175	181	first strand
Strand 2	L	164	171	anti-parallel
Strand 3	L	196	205	anti-parallel
Strand 4	L	210	211	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	175	181	first strand
Strand 2	L	164	171	anti-parallel
Strand 3	L	196	205	anti-parallel
Strand 4	L	215	220	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	53	56	anti-parallel
Strand 3	C	204	205	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	46	first strand
Strand 2	H	49	53	anti-parallel
Strand 3	H	96	98	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	84	85	first strand
Strand 2	H	65	71	anti-parallel
Strand 3	H	108	117	anti-parallel
Strand 4	H	125	126	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	121	first strand
Strand 2	H	108	117	anti-parallel
Strand 3	H	131	132	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	143	148	first strand
Strand 2	H	151	156	anti-parallel
Strand 3	H	190	194	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	179	183	first strand
Strand 2	H	164	171	anti-parallel
Strand 3	H	201	208	anti-parallel
Strand 4	H	222	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DF3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DF3