Analysis of interatomic Contacts of Structural Units in PDB entry:
6DKS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DKS entry

There are 7 chains in PDB entry 6DKS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	A 1	T 15
B	T 1	A 15
C	PRO 53	PRO 474
D	ILE 2	ALA 2814
E	A 1	T 15
F	T 1	A 15
G	PRO 53	ARG 422

There are 45 helices in PDB entry 6DKS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	58	69	Right-handed alpha
Helix 2	AA2	C	104	115	Right-handed alpha
Helix 3	AA3	C	119	124	Right-handed alpha
Helix 4	AA4	C	349	353	Right-handed 310
Helix 5	AA5	C	433	438	Right-handed 310
Helix 6	AA6	D	16	32	Right-handed alpha
Helix 7	AA7	D	42	54	Right-handed alpha
Helix 8	AA8	D	66	73	Right-handed alpha
Helix 9	AA9	D	82	87	Right-handed alpha
Helix 10	AB1	D	90	97	Right-handed alpha
Helix 11	AB2	D	131	142	Right-handed alpha
Helix 12	AB3	D	153	165	Right-handed alpha
Helix 13	AB4	D	185	201	Right-handed alpha
Helix 14	AB5	D	209	219	Right-handed alpha
Helix 15	AB6	D	228	230	Right-handed 310
Helix 16	AB7	D	231	238	Right-handed alpha
Helix 17	AB8	D	272	283	Right-handed alpha
Helix 18	AB9	D	286	297	Right-handed alpha
Helix 19	AC1	D	304	312	Right-handed alpha
Helix 20	AC2	D	314	327	Right-handed alpha
Helix 21	AC3	D	335	352	Right-handed alpha
Helix 22	AC4	D	356	368	Right-handed alpha
Helix 23	AC5	G	58	69	Right-handed alpha
Helix 24	AC6	G	104	115	Right-handed alpha
Helix 25	AC7	G	119	124	Right-handed alpha
Helix 26	AC8	G	199	203	Right-handed 310
Helix 27	AC9	G	349	353	Right-handed 310
Helix 28	AD1	G	433	438	Right-handed 310
Helix 29	AD2	H	16	32	Right-handed alpha
Helix 30	AD3	H	42	54	Right-handed alpha
Helix 31	AD4	H	66	73	Right-handed alpha
Helix 32	AD5	H	82	87	Right-handed alpha
Helix 33	AD6	H	90	97	Right-handed alpha
Helix 34	AD7	H	131	142	Right-handed alpha
Helix 35	AD8	H	153	164	Right-handed alpha
Helix 36	AD9	H	185	201	Right-handed alpha
Helix 37	AE1	H	209	219	Right-handed alpha
Helix 38	AE2	H	228	230	Right-handed 310
Helix 39	AE3	H	231	238	Right-handed alpha
Helix 40	AE4	H	272	283	Right-handed alpha
Helix 41	AE5	H	286	297	Right-handed alpha
Helix 42	AE6	H	304	312	Right-handed alpha
Helix 43	AE7	H	314	327	Right-handed alpha
Helix 44	AE8	H	335	352	Right-handed alpha
Helix 45	AE9	H	356	368	Right-handed alpha

There are 28 sheets in PDB entry 6DKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	150	first strand
Strand 2	C	98	102	anti-parallel
Strand 3	C	72	79	anti-parallel
Strand 4	C	354	368	anti-parallel
Strand 5	C	460	462	anti-parallel
Strand 6	C	448	456	anti-parallel
Strand 7	C	408	412	anti-parallel
Strand 8	C	415	416	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	416	first strand
Strand 2	C	408	412	anti-parallel
Strand 3	C	448	456	anti-parallel
Strand 4	C	467	473	anti-parallel
Strand 5	D	2787	2794	anti-parallel
Strand 6	D	2780	2784	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	148	150	first strand
Strand 2	C	98	102	anti-parallel
Strand 3	C	72	79	anti-parallel
Strand 4	C	354	368	anti-parallel
Strand 5	C	211	218	anti-parallel
Strand 6	C	246	251	anti-parallel
Strand 7	C	273	278	anti-parallel
Strand 8	C	288	294	anti-parallel
Strand 9	C	310	316	anti-parallel
Strand 10	C	354	368	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	338	first strand
Strand 2	C	345	347	anti-parallel
Strand 3	C	297	299	anti-parallel
Strand 4	C	288	294	anti-parallel
Strand 5	C	273	278	anti-parallel
Strand 6	C	246	251	anti-parallel
Strand 7	C	211	218	anti-parallel
Strand 8	C	226	231	anti-parallel
Strand 9	C	236	239	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	83	first strand
Strand 2	C	187	190	parallel
Strand 3	C	164	165	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	125	131	anti-parallel
Strand 3	C	167	173	anti-parallel
Strand 4	C	178	183	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	262	first strand
Strand 2	D	2803	2805	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	327	first strand
Strand 2	C	330	335	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	389	first strand
Strand 2	C	396	402	anti-parallel
Strand 3	C	426	430	anti-parallel
Strand 4	C	419	421	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	38	first strand
Strand 2	D	6	10	parallel
Strand 3	D	59	63	parallel
Strand 4	D	258	266	anti-parallel
Strand 5	D	106	111	anti-parallel
Strand 6	D	301	302	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	38	first strand
Strand 2	D	6	10	parallel
Strand 3	D	59	63	parallel
Strand 4	D	258	266	anti-parallel
Strand 5	D	328	329	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	102	103	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	222	227	parallel
Strand 3	D	114	118	anti-parallel
Strand 4	D	242	245	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	172	first strand
Strand 2	D	175	182	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	150	first strand
Strand 2	G	98	102	anti-parallel
Strand 3	G	72	79	anti-parallel
Strand 4	G	354	368	anti-parallel
Strand 5	G	460	462	anti-parallel
Strand 6	G	448	456	anti-parallel
Strand 7	G	408	412	anti-parallel
Strand 8	G	415	416	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	415	416	first strand
Strand 2	G	408	412	anti-parallel
Strand 3	G	448	456	anti-parallel
Strand 4	G	467	473	anti-parallel
Strand 5	H	2787	2794	anti-parallel
Strand 6	H	2780	2784	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	150	first strand
Strand 2	G	98	102	anti-parallel
Strand 3	G	72	79	anti-parallel
Strand 4	G	354	368	anti-parallel
Strand 5	G	211	218	anti-parallel
Strand 6	G	246	251	anti-parallel
Strand 7	G	273	278	anti-parallel
Strand 8	G	288	294	anti-parallel
Strand 9	G	310	316	anti-parallel
Strand 10	G	354	368	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	337	338	first strand
Strand 2	G	345	347	anti-parallel
Strand 3	G	297	299	anti-parallel
Strand 4	G	288	294	anti-parallel
Strand 5	G	273	278	anti-parallel
Strand 6	G	246	251	anti-parallel
Strand 7	G	211	218	anti-parallel
Strand 8	G	226	231	anti-parallel
Strand 9	G	236	239	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	81	83	first strand
Strand 2	G	187	190	parallel
Strand 3	G	164	165	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	139	141	first strand
Strand 2	G	125	131	anti-parallel
Strand 3	G	167	173	anti-parallel
Strand 4	G	178	183	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	260	262	first strand
Strand 2	H	2803	2805	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	322	327	first strand
Strand 2	G	330	335	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	382	389	first strand
Strand 2	G	396	402	anti-parallel
Strand 3	G	426	430	anti-parallel
Strand 4	G	419	423	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	38	first strand
Strand 2	H	6	10	parallel
Strand 3	H	59	63	parallel
Strand 4	H	258	266	anti-parallel
Strand 5	H	105	111	anti-parallel
Strand 6	H	301	302	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	38	first strand
Strand 2	H	6	10	parallel
Strand 3	H	59	63	parallel
Strand 4	H	258	266	anti-parallel
Strand 5	H	328	329	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	98	99	first strand
Strand 2	H	102	103	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	145	147	first strand
Strand 2	H	222	227	parallel
Strand 3	H	114	118	anti-parallel
Strand 4	H	242	245	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	172	first strand
Strand 2	H	175	182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DKS

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DKS