Analysis of interatomic Contacts of Structural Units in PDB entry:
6DLO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DLO entry

There are 2 chains in PDB entry 6DLO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 2141	ILE 2498
A	SER 2141	TRP 2496

There are 7 helices in PDB entry 6DLO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	2278	2282	Right-handed 310
Helix 2	AA2	B	2339	2344	Right-handed 310
Helix 3	AA3	B	2346	2351	Right-handed alpha
Helix 4	AA4	B	2389	2394	Right-handed alpha
Helix 5	AA5	A	2278	2282	Right-handed 310
Helix 6	AA6	A	2346	2351	Right-handed alpha
Helix 7	AA7	A	2389	2394	Right-handed alpha

There are 14 sheets in PDB entry 6DLO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2142	2145	first strand
Strand 2	B	2491	2497	anti-parallel
Strand 3	B	2468	2475	anti-parallel
Strand 4	B	2454	2462	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2152	2158	first strand
Strand 2	B	2166	2171	anti-parallel
Strand 3	B	2177	2183	anti-parallel
Strand 4	B	2189	2195	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2199	2207	first strand
Strand 2	B	2212	2219	anti-parallel
Strand 3	B	2224	2228	anti-parallel
Strand 4	B	2235	2237	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2245	2251	first strand
Strand 2	B	2262	2267	anti-parallel
Strand 3	B	2271	2276	anti-parallel
Strand 4	B	2289	2292	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2300	2304	first strand
Strand 2	B	2315	2319	anti-parallel
Strand 3	B	2322	2326	anti-parallel
Strand 4	B	2335	2337	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2354	2359	first strand
Strand 2	B	2363	2367	anti-parallel
Strand 3	B	2372	2376	anti-parallel
Strand 4	B	2383	2388	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2414	2418	first strand
Strand 2	B	2425	2429	anti-parallel
Strand 3	B	2434	2437	anti-parallel
Strand 4	B	2444	2448	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2142	2145	first strand
Strand 2	A	2490	2496	anti-parallel
Strand 3	A	2469	2476	anti-parallel
Strand 4	A	2455	2461	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2152	2158	first strand
Strand 2	A	2166	2171	anti-parallel
Strand 3	A	2177	2183	anti-parallel
Strand 4	A	2189	2195	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2199	2207	first strand
Strand 2	A	2212	2219	anti-parallel
Strand 3	A	2224	2228	anti-parallel
Strand 4	A	2235	2237	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2245	2252	first strand
Strand 2	A	2261	2267	anti-parallel
Strand 3	A	2271	2276	anti-parallel
Strand 4	A	2289	2292	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2300	2304	first strand
Strand 2	A	2315	2319	anti-parallel
Strand 3	A	2322	2326	anti-parallel
Strand 4	A	2332	2337	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2354	2359	first strand
Strand 2	A	2363	2367	anti-parallel
Strand 3	A	2372	2376	anti-parallel
Strand 4	A	2383	2388	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2414	2419	first strand
Strand 2	A	2424	2429	anti-parallel
Strand 3	A	2434	2438	anti-parallel
Strand 4	A	2444	2448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DLO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DLO