Analysis of interatomic Contacts of Structural Units in PDB entry:
6DM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DM0 entry

There are 4 chains in PDB entry 6DM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	GLY 1209
B	ASN 10	GLY 1209
C	ASN 10	GLY 1209
D	ASN 10	GLY 1209

There are134 helices in PDB entry 6DM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	37	Right-handed alpha
Helix 2	AA2	A	54	69	Right-handed alpha
Helix 3	AA3	A	81	93	Right-handed alpha
Helix 4	AA4	A	117	129	Right-handed alpha
Helix 5	AA5	A	143	156	Right-handed alpha
Helix 6	AA6	A	169	173	Right-handed 310
Helix 7	AA7	A	175	185	Right-handed alpha
Helix 8	AA8	A	197	212	Right-handed alpha
Helix 9	AA9	A	231	235	Right-handed 310
Helix 10	AB1	A	252	264	Right-handed alpha
Helix 11	AB2	A	279	302	Right-handed alpha
Helix 12	AB3	A	324	335	Right-handed alpha
Helix 13	AB4	A	416	419	Right-handed 310
Helix 14	AB5	A	423	437	Right-handed alpha
Helix 15	AB6	A	461	469	Right-handed alpha
Helix 16	AB7	A	522	545	Right-handed alpha
Helix 17	AB8	A	572	585	Right-handed alpha
Helix 18	AB9	A	595	624	Right-handed alpha
Helix 19	AC1	A	633	635	Right-handed 310
Helix 20	AC2	A	636	642	Right-handed alpha
Helix 21	AC3	A	653	662	Right-handed alpha
Helix 22	AC4	A	664	676	Right-handed alpha
Helix 23	AC5	A	685	697	Right-handed alpha
Helix 24	AC6	A	706	714	Right-handed alpha
Helix 25	AC7	A	742	756	Right-handed alpha
Helix 26	AC8	A	757	768	Right-handed alpha
Helix 27	AC9	A	788	791	Right-handed 310
Helix 28	AD1	A	792	820	Right-handed alpha
Helix 29	AD2	A	1006	1028	Right-handed alpha
Helix 30	AD3	A	1091	1094	Right-handed 310
Helix 31	AD4	A	1095	1102	Right-handed alpha
Helix 32	AD5	A	1105	1123	Right-handed alpha
Helix 33	AD6	A	1132	1160	Right-handed alpha
Helix 34	AD7	A	1178	1207	Right-handed alpha
Helix 35	AD8	B	22	36	Right-handed alpha
Helix 36	AD9	B	54	69	Right-handed alpha
Helix 37	AE1	B	81	93	Right-handed alpha
Helix 38	AE2	B	117	129	Right-handed alpha
Helix 39	AE3	B	139	142	Right-handed 310
Helix 40	AE4	B	143	156	Right-handed alpha
Helix 41	AE5	B	169	173	Right-handed 310
Helix 42	AE6	B	175	185	Right-handed alpha
Helix 43	AE7	B	197	212	Right-handed alpha
Helix 44	AE8	B	252	264	Right-handed alpha
Helix 45	AE9	B	279	302	Right-handed alpha
Helix 46	AF1	B	324	334	Right-handed alpha
Helix 47	AF2	B	416	419	Right-handed 310
Helix 48	AF3	B	423	437	Right-handed alpha
Helix 49	AF4	B	461	469	Right-handed alpha
Helix 50	AF5	B	522	544	Right-handed alpha
Helix 51	AF6	B	572	585	Right-handed alpha
Helix 52	AF7	B	598	617	Right-handed alpha
Helix 53	AF8	B	619	624	Right-handed 310
Helix 54	AF9	B	637	642	Right-handed alpha
Helix 55	AG1	B	653	662	Right-handed alpha
Helix 56	AG2	B	664	676	Right-handed alpha
Helix 57	AG3	B	685	697	Right-handed alpha
Helix 58	AG4	B	706	714	Right-handed alpha
Helix 59	AG5	B	742	756	Right-handed alpha
Helix 60	AG6	B	757	768	Right-handed alpha
Helix 61	AG7	B	774	779	Right-handed alpha
Helix 62	AG8	B	793	817	Right-handed alpha
Helix 63	AG9	B	1007	1028	Right-handed alpha
Helix 64	AH1	B	1091	1103	Right-handed alpha
Helix 65	AH2	B	1104	1123	Right-handed alpha
Helix 66	AH3	B	1132	1161	Right-handed alpha
Helix 67	AH4	B	1176	1209	Right-handed alpha
Helix 68	AH5	C	22	37	Right-handed alpha
Helix 69	AH6	C	54	69	Right-handed alpha
Helix 70	AH7	C	81	93	Right-handed alpha
Helix 71	AH8	C	117	129	Right-handed alpha
Helix 72	AH9	C	143	156	Right-handed alpha
Helix 73	AI1	C	169	173	Right-handed 310
Helix 74	AI2	C	175	185	Right-handed alpha
Helix 75	AI3	C	197	212	Right-handed alpha
Helix 76	AI4	C	231	235	Right-handed 310
Helix 77	AI5	C	252	264	Right-handed alpha
Helix 78	AI6	C	279	302	Right-handed alpha
Helix 79	AI7	C	324	335	Right-handed alpha
Helix 80	AI8	C	416	419	Right-handed 310
Helix 81	AI9	C	423	437	Right-handed alpha
Helix 82	AJ1	C	461	469	Right-handed alpha
Helix 83	AJ2	C	522	545	Right-handed alpha
Helix 84	AJ3	C	572	585	Right-handed alpha
Helix 85	AJ4	C	595	624	Right-handed alpha
Helix 86	AJ5	C	633	635	Right-handed 310
Helix 87	AJ6	C	636	642	Right-handed alpha
Helix 88	AJ7	C	653	662	Right-handed alpha
Helix 89	AJ8	C	664	676	Right-handed alpha
Helix 90	AJ9	C	685	697	Right-handed alpha
Helix 91	AK1	C	706	714	Right-handed alpha
Helix 92	AK2	C	742	756	Right-handed alpha
Helix 93	AK3	C	757	768	Right-handed alpha
Helix 94	AK4	C	788	791	Right-handed 310
Helix 95	AK5	C	792	820	Right-handed alpha
Helix 96	AK6	C	1006	1028	Right-handed alpha
Helix 97	AK7	C	1091	1094	Right-handed 310
Helix 98	AK8	C	1095	1102	Right-handed alpha
Helix 99	AK9	C	1105	1123	Right-handed alpha
Helix 100	AL1	C	1132	1160	Right-handed alpha
Helix 101	AL2	C	1178	1207	Right-handed alpha
Helix 102	AL3	D	22	36	Right-handed alpha
Helix 103	AL4	D	54	69	Right-handed alpha
Helix 104	AL5	D	81	93	Right-handed alpha
Helix 105	AL6	D	117	129	Right-handed alpha
Helix 106	AL7	D	139	142	Right-handed 310
Helix 107	AL8	D	143	156	Right-handed alpha
Helix 108	AL9	D	169	173	Right-handed 310
Helix 109	AM1	D	175	185	Right-handed alpha
Helix 110	AM2	D	197	212	Right-handed alpha
Helix 111	AM3	D	252	264	Right-handed alpha
Helix 112	AM4	D	279	302	Right-handed alpha
Helix 113	AM5	D	324	334	Right-handed alpha
Helix 114	AM6	D	416	419	Right-handed 310
Helix 115	AM7	D	423	437	Right-handed alpha
Helix 116	AM8	D	461	469	Right-handed alpha
Helix 117	AM9	D	522	544	Right-handed alpha
Helix 118	AN1	D	572	585	Right-handed alpha
Helix 119	AN2	D	598	617	Right-handed alpha
Helix 120	AN3	D	619	624	Right-handed 310
Helix 121	AN4	D	637	642	Right-handed alpha
Helix 122	AN5	D	653	662	Right-handed alpha
Helix 123	AN6	D	664	676	Right-handed alpha
Helix 124	AN7	D	685	697	Right-handed alpha
Helix 125	AN8	D	706	714	Right-handed alpha
Helix 126	AN9	D	742	756	Right-handed alpha
Helix 127	AO1	D	757	768	Right-handed alpha
Helix 128	AO2	D	774	779	Right-handed alpha
Helix 129	AO3	D	793	817	Right-handed alpha
Helix 130	AO4	D	1007	1028	Right-handed alpha
Helix 131	AO5	D	1091	1103	Right-handed alpha
Helix 132	AO6	D	1104	1123	Right-handed alpha
Helix 133	AO7	D	1132	1161	Right-handed alpha
Helix 134	AO8	D	1176	1209	Right-handed alpha

There are 38 sheets in PDB entry 6DM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	49	first strand
Strand 2	A	11	18	parallel
Strand 3	A	72	75	parallel
Strand 4	A	96	98	parallel
Strand 5	A	110	112	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	164	first strand
Strand 2	A	132	137	parallel
Strand 3	A	191	195	parallel
Strand 4	A	219	222	parallel
Strand 5	A	241	246	parallel
Strand 6	A	357	363	anti-parallel
Strand 7	A	368	375	anti-parallel
Strand 8	A	381	382	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	343	344	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	347	first strand
Strand 2	A	353	354	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	444	first strand
Strand 2	A	394	399	parallel
Strand 3	A	474	480	parallel
Strand 4	A	730	737	anti-parallel
Strand 5	A	489	491	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	439	444	first strand
Strand 2	A	394	399	parallel
Strand 3	A	474	480	parallel
Strand 4	A	730	737	anti-parallel
Strand 5	A	496	498	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	421	422	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	648	first strand
Strand 2	A	700	705	parallel
Strand 3	A	500	505	anti-parallel
Strand 4	A	720	723	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1033	1036	first strand
Strand 2	A	1057	1060	anti-parallel
Strand 3	A	1064	1067	anti-parallel
Strand 4	A	1077	1078	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	49	first strand
Strand 2	B	12	18	parallel
Strand 3	B	72	75	parallel
Strand 4	B	96	98	parallel
Strand 5	B	110	112	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	164	first strand
Strand 2	B	132	137	parallel
Strand 3	B	191	195	parallel
Strand 4	B	219	222	parallel
Strand 5	B	241	246	parallel
Strand 6	B	357	363	anti-parallel
Strand 7	B	368	375	anti-parallel
Strand 8	B	380	382	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	343	344	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	347	first strand
Strand 2	B	353	354	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	395	399	first strand
Strand 2	B	440	444	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	421	422	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	491	first strand
Strand 2	B	735	737	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	496	498	first strand
Strand 2	B	730	732	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	648	first strand
Strand 2	B	700	705	parallel
Strand 3	B	500	505	anti-parallel
Strand 4	B	720	723	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1057	1060	first strand
Strand 2	B	1033	1036	anti-parallel
Strand 3	B	1174	1175	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	49	first strand
Strand 2	C	11	18	parallel
Strand 3	C	72	75	parallel
Strand 4	C	96	98	parallel
Strand 5	C	110	112	parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	132	137	parallel
Strand 3	C	191	195	parallel
Strand 4	C	219	222	parallel
Strand 5	C	241	246	parallel
Strand 6	C	357	363	anti-parallel
Strand 7	C	368	375	anti-parallel
Strand 8	C	381	382	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	343	344	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	347	first strand
Strand 2	C	353	354	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	444	first strand
Strand 2	C	394	399	parallel
Strand 3	C	474	480	parallel
Strand 4	C	730	737	anti-parallel
Strand 5	C	489	491	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	444	first strand
Strand 2	C	394	399	parallel
Strand 3	C	474	480	parallel
Strand 4	C	730	737	anti-parallel
Strand 5	C	496	498	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	421	422	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	646	648	first strand
Strand 2	C	700	705	parallel
Strand 3	C	500	505	anti-parallel
Strand 4	C	720	723	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1033	1036	first strand
Strand 2	C	1057	1060	anti-parallel
Strand 3	C	1064	1067	anti-parallel
Strand 4	C	1077	1078	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	49	first strand
Strand 2	D	12	18	parallel
Strand 3	D	73	75	parallel
Strand 4	D	96	98	parallel
Strand 5	D	110	112	parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	164	first strand
Strand 2	D	132	137	parallel
Strand 3	D	191	195	parallel
Strand 4	D	219	222	parallel
Strand 5	D	241	246	parallel
Strand 6	D	357	363	anti-parallel
Strand 7	D	368	375	anti-parallel
Strand 8	D	380	382	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	340	first strand
Strand 2	D	343	344	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	347	first strand
Strand 2	D	353	354	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	399	first strand
Strand 2	D	440	444	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	421	422	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	491	first strand
Strand 2	D	735	737	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	498	first strand
Strand 2	D	730	732	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	648	first strand
Strand 2	D	700	705	parallel
Strand 3	D	500	505	anti-parallel
Strand 4	D	720	723	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1057	1060	first strand
Strand 2	D	1033	1036	anti-parallel
Strand 3	D	1174	1175	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DM0