Analysis of interatomic Contacts of Structural Units in PDB entry:
6DSV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DSV entry

There are 3 chains in PDB entry 6DSV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
G 1 A 11
A
ALA 300LYS 876
T
T 4 A 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6DSV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
308 312Right-handed 310
Helix 2
AA2
A
347 352Right-handed alpha
Helix 3
AA3
A
354 363Right-handed alpha
Helix 4
AA4
A
372 382Right-handed alpha
Helix 5
AA5
A
394 402Right-handed alpha
Helix 6
AA6
A
403 406Right-handed 310
Helix 7
AA7
A
409 416Right-handed alpha
Helix 8
AA8
A
424 430Right-handed alpha
Helix 9
AA9
A
431 435Right-handed 310
Helix 10
AB1
A
439 468Right-handed alpha
Helix 11
AB2
A
470 477Right-handed alpha
Helix 12
AB3
A
477 492Right-handed alpha
Helix 13
AB4
A
496 522Right-handed alpha
Helix 14
AB5
A
530 540Right-handed alpha
Helix 15
AB6
A
557 565Right-handed alpha
Helix 16
AB7
A
566 568Right-handed 310
Helix 17
AB8
A
569 587Right-handed alpha
Helix 18
AB9
A
587 595Right-handed alpha
Helix 19
AC1
A
622 626Right-handed 310
Helix 20
AC2
A
630 635Right-handed alpha
Helix 21
AC3
A
636 638Right-handed 310
Helix 22
AC4
A
656 667Right-handed alpha
Helix 23
AC5
A
668 677Right-handed alpha
Helix 24
AC6
A
680 691Right-handed alpha
Helix 25
AC7
A
693 697Right-handed 310
Helix 26
AC8
A
698 715Right-handed alpha
Helix 27
AC9
A
717 726Right-handed alpha
Helix 28
AD1
A
728 743Right-handed alpha
Helix 29
AD2
A
743 761Right-handed alpha
Helix 30
AD3
A
774 778Right-handed 310
Helix 31
AD4
A
780 818Right-handed alpha
Helix 32
AD5
A
840 854Right-handed alpha
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There are 5 sheets in PDB entry 6DSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
302 303first strand
Strand 2
A
342 346parallel
Strand 3
A
334 339anti-parallel
Strand 4
A
315 321anti-parallel
Strand 5
A
367 370parallel
Strand 6
A
390 393parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
601 602first strand
Strand 2
A
493 495anti-parallel
Strand 3
A
640 641anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
605 607first strand
Strand 2
A
617 619anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
823 828first strand
Strand 2
A
831 837anti-parallel
Strand 3
A
647 654anti-parallel
Strand 4
A
864 869anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
762 764first strand
Strand 2
A
770 772anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il