Analysis of interatomic Contacts of Structural Units in PDB entry:
6DV5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DV5 entry

There are 24 chains in PDB entry 6DV5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 6	GLN 190
A	MET 1	LYS 205
D	ARG 5	LYS 205
F	ARG 5	LYS 205
H	MET 1	GLY 192
J	THR 2	LYS 205
L	MET 1	LYS 205
N	MET 1	LYS 205
P	MET 1	LYS 205
R	MET 1	LYS 205
T	THR 2	LYS 205
V	MET 1	LYS 205
X	MET 1	LYS 205
C	MET 1	GLY 192
E	VAL 6	LYS 205
G	THR 2	LYS 205
I	VAL 6	LYS 205
K	MET 1	LYS 205
M	ARG 4	LYS 205
O	MET 1	LYS 205
Q	MET 1	ALA 189
S	MET 1	LYS 205
U	MET 1	LYS 205
W	MET 1	GLU 195

There are 58 helices in PDB entry 6DV5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	26	32	Right-handed alpha
Helix 2	AA2	B	149	153	Right-handed 310
Helix 3	AA3	A	25	30	Right-handed alpha
Helix 4	AA4	A	47	51	Right-handed 310
Helix 5	AA5	D	12	12	Right-handed 310
Helix 6	AA6	D	17	20	Right-handed 310
Helix 7	AA7	D	26	31	Right-handed alpha
Helix 8	AA8	D	149	153	Right-handed 310
Helix 9	AA9	F	12	12	Right-handed alpha
Helix 10	AB1	F	18	21	Right-handed alpha
Helix 11	AB2	F	26	32	Right-handed alpha
Helix 12	AB3	H	26	32	Right-handed alpha
Helix 13	AB4	H	71	76	Right-handed alpha
Helix 14	AB5	H	149	153	Right-handed 310
Helix 15	AB6	J	26	32	Right-handed alpha
Helix 16	AB7	J	149	153	Right-handed 310
Helix 17	AB8	L	7	12	Right-handed alpha
Helix 18	AB9	L	26	32	Right-handed alpha
Helix 19	AC1	L	71	76	Right-handed alpha
Helix 20	AC2	L	149	153	Right-handed 310
Helix 21	AC3	N	7	12	Right-handed 310
Helix 22	AC4	N	17	20	Right-handed 310
Helix 23	AC5	N	26	32	Right-handed alpha
Helix 24	AC6	P	12	12	Right-handed 310
Helix 25	AC7	P	17	20	Right-handed 310
Helix 26	AC8	P	26	32	Right-handed alpha
Helix 27	AC9	P	37	41	Right-handed 310
Helix 28	AD1	P	74	79	Right-handed alpha
Helix 29	AD2	P	149	153	Right-handed 310
Helix 30	AD3	R	26	32	Right-handed alpha
Helix 31	AD4	T	12	12	Right-handed 310
Helix 32	AD5	T	17	20	Right-handed 310
Helix 33	AD6	T	26	32	Right-handed alpha
Helix 34	AD7	T	37	41	Right-handed 310
Helix 35	AD8	T	71	76	Right-handed alpha
Helix 36	AD9	T	149	153	Right-handed 310
Helix 37	AE1	V	26	32	Right-handed alpha
Helix 38	AE2	V	37	41	Right-handed 310
Helix 39	AE3	X	7	11	Right-handed 310
Helix 40	AE4	X	26	31	Right-handed alpha
Helix 41	AE5	C	25	30	Right-handed alpha
Helix 42	AE6	E	25	30	Right-handed alpha
Helix 43	AE7	E	73	78	Right-handed alpha
Helix 44	AE8	G	25	30	Right-handed alpha
Helix 45	AE9	G	196	200	Right-handed 310
Helix 46	AF1	I	25	31	Right-handed alpha
Helix 47	AF2	I	46	50	Right-handed 310
Helix 48	AF3	K	25	30	Right-handed alpha
Helix 49	AF4	M	25	30	Right-handed alpha
Helix 50	AF5	M	73	78	Right-handed alpha
Helix 51	AF6	M	149	153	Right-handed 310
Helix 52	AF7	O	25	32	Right-handed alpha
Helix 53	AF8	O	73	78	Right-handed alpha
Helix 54	AF9	Q	25	31	Right-handed alpha
Helix 55	AG1	Q	73	78	Right-handed alpha
Helix 56	AG2	S	46	50	Right-handed 310
Helix 57	AG3	S	196	200	Right-handed 310
Helix 58	AG4	W	25	31	Right-handed alpha

There are 42 sheets in PDB entry 6DV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	100	first strand
Strand 2	B	162	167	anti-parallel
Strand 3	B	154	157	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	114	first strand
Strand 2	B	117	125	anti-parallel
Strand 3	B	135	143	anti-parallel
Strand 4	E	134	143	anti-parallel
Strand 5	E	117	123	anti-parallel
Strand 6	E	108	114	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	100	first strand
Strand 2	A	162	167	anti-parallel
Strand 3	A	154	156	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	114	first strand
Strand 2	A	117	123	anti-parallel
Strand 3	A	137	143	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	134	135	first strand
Strand 2	D	135	143	anti-parallel
Strand 3	D	117	125	anti-parallel
Strand 4	D	108	114	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	100	first strand
Strand 2	D	162	168	anti-parallel
Strand 3	D	154	157	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	100	first strand
Strand 2	F	162	166	anti-parallel
Strand 3	F	154	157	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	114	first strand
Strand 2	F	117	123	anti-parallel
Strand 3	F	137	143	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	100	first strand
Strand 2	H	162	167	anti-parallel
Strand 3	H	154	157	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	114	first strand
Strand 2	H	117	124	anti-parallel
Strand 3	H	136	142	anti-parallel
Strand 4	K	134	135	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	95	100	first strand
Strand 2	J	162	167	anti-parallel
Strand 3	J	154	157	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	108	114	first strand
Strand 2	J	117	125	anti-parallel
Strand 3	J	135	143	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	95	100	first strand
Strand 2	L	162	167	anti-parallel
Strand 3	L	154	157	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	108	114	first strand
Strand 2	L	117	123	anti-parallel
Strand 3	L	137	143	anti-parallel
Strand 4	Q	134	143	anti-parallel
Strand 5	Q	117	123	anti-parallel
Strand 6	Q	108	114	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	108	114	first strand
Strand 2	N	117	124	anti-parallel
Strand 3	N	136	143	anti-parallel
Strand 4	M	136	143	anti-parallel
Strand 5	M	117	123	anti-parallel
Strand 6	M	108	114	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	154	155	first strand
Strand 2	N	165	166	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	95	100	first strand
Strand 2	P	162	167	anti-parallel
Strand 3	P	154	157	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	108	114	first strand
Strand 2	P	117	125	anti-parallel
Strand 3	P	135	143	anti-parallel
Strand 4	O	134	135	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	95	100	first strand
Strand 2	R	162	167	anti-parallel
Strand 3	R	154	157	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	108	114	first strand
Strand 2	R	117	124	anti-parallel
Strand 3	R	136	143	anti-parallel
Strand 4	W	134	143	anti-parallel
Strand 5	W	117	123	anti-parallel
Strand 6	W	108	114	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	95	100	first strand
Strand 2	T	162	167	anti-parallel
Strand 3	T	154	157	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	108	114	first strand
Strand 2	T	117	125	anti-parallel
Strand 3	T	135	143	anti-parallel
Strand 4	S	136	143	anti-parallel
Strand 5	S	117	123	anti-parallel
Strand 6	S	108	113	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	95	100	first strand
Strand 2	V	162	167	anti-parallel
Strand 3	V	154	158	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	108	114	first strand
Strand 2	V	117	124	anti-parallel
Strand 3	V	136	143	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	95	100	first strand
Strand 2	X	162	167	anti-parallel
Strand 3	X	154	157	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	108	114	first strand
Strand 2	X	117	123	anti-parallel
Strand 3	X	136	143	anti-parallel
Strand 4	G	134	143	anti-parallel
Strand 5	G	117	123	anti-parallel
Strand 6	G	108	114	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	100	first strand
Strand 2	C	162	166	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	114	first strand
Strand 2	C	117	123	anti-parallel
Strand 3	C	137	143	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	100	first strand
Strand 2	E	162	168	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	95	100	first strand
Strand 2	G	162	167	anti-parallel
Strand 3	G	154	156	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	95	100	first strand
Strand 2	I	162	167	anti-parallel
Strand 3	I	154	156	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	108	114	first strand
Strand 2	I	117	123	anti-parallel
Strand 3	I	137	143	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	95	100	first strand
Strand 2	K	162	167	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	108	114	first strand
Strand 2	K	117	123	anti-parallel
Strand 3	K	137	143	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	95	100	first strand
Strand 2	M	162	167	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	95	100	first strand
Strand 2	O	162	167	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	108	114	first strand
Strand 2	O	117	123	anti-parallel
Strand 3	O	137	143	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	95	100	first strand
Strand 2	Q	162	167	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	95	100	first strand
Strand 2	S	162	167	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	95	100	first strand
Strand 2	U	162	167	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	108	114	first strand
Strand 2	U	117	123	anti-parallel
Strand 3	U	137	143	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	95	100	first strand
Strand 2	W	162	167	anti-parallel
Strand 3	W	154	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DV5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DV5