Analysis of interatomic Contacts of Structural Units in PDB entry:
6DW0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DW0 entry

There are 5 chains in PDB entry 6DW0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	GLY 25	ASN 323
C	THR 12	ASN 307
A	THR 12	ASN 307
E	SER 10	HIS 345
B	SER 10	HIS 345

There are 35 helices in PDB entry 6DW0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	25	34	Right-handed alpha
Helix 2	AA2	D	233	257	Right-handed alpha
Helix 3	AA3	D	261	284	Right-handed alpha
Helix 4	AA4	D	296	320	Right-handed alpha
Helix 5	AA5	C	13	21	Right-handed alpha
Helix 6	AA6	C	71	75	Right-handed 310
Helix 7	AA7	C	86	92	Right-handed alpha
Helix 8	AA8	C	173	176	Right-handed 310
Helix 9	AA9	C	222	244	Right-handed alpha
Helix 10	AB1	C	251	274	Right-handed alpha
Helix 11	AB2	C	283	307	Right-handed alpha
Helix 12	AB3	A	13	23	Right-handed alpha
Helix 13	AB4	A	72	75	Right-handed 310
Helix 14	AB5	A	86	91	Right-handed alpha
Helix 15	AB6	A	173	178	Right-handed alpha
Helix 16	AB7	A	225	240	Right-handed alpha
Helix 17	AB8	A	241	246	Right-handed alpha
Helix 18	AB9	A	250	276	Right-handed alpha
Helix 19	AC1	A	283	307	Right-handed alpha
Helix 20	AC2	E	11	21	Right-handed alpha
Helix 21	AC3	E	70	73	Right-handed 310
Helix 22	AC4	E	84	91	Right-handed 310
Helix 23	AC5	E	170	173	Right-handed 310
Helix 24	AC6	E	217	242	Right-handed alpha
Helix 25	AC7	E	246	272	Right-handed alpha
Helix 26	AC8	E	280	302	Right-handed alpha
Helix 27	AC9	E	321	345	Right-handed alpha
Helix 28	AD1	B	11	21	Right-handed alpha
Helix 29	AD2	B	84	90	Right-handed 310
Helix 30	AD3	B	170	173	Right-handed 310
Helix 31	AD4	B	218	242	Right-handed alpha
Helix 32	AD5	B	246	256	Right-handed alpha
Helix 33	AD6	B	256	272	Right-handed alpha
Helix 34	AD7	B	279	302	Right-handed alpha
Helix 35	AD8	B	321	345	Right-handed alpha

There are 19 sheets in PDB entry 6DW0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	130	134	anti-parallel
Strand 3	D	139	150	anti-parallel
Strand 4	D	71	82	anti-parallel
Strand 5	D	52	65	anti-parallel
Strand 6	D	180	182	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	98	first strand
Strand 2	D	130	134	anti-parallel
Strand 3	D	139	150	anti-parallel
Strand 4	D	71	82	anti-parallel
Strand 5	D	52	65	anti-parallel
Strand 6	D	191	192	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	113	first strand
Strand 2	D	169	170	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	214	first strand
Strand 2	D	219	230	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	128	137	anti-parallel
Strand 3	C	58	69	anti-parallel
Strand 4	C	38	53	anti-parallel
Strand 5	C	166	170	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	128	137	anti-parallel
Strand 3	C	58	69	anti-parallel
Strand 4	C	38	53	anti-parallel
Strand 5	C	178	179	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	85	first strand
Strand 2	C	118	121	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	149	157	anti-parallel
Strand 3	C	208	220	anti-parallel
Strand 4	C	190	198	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	149	157	anti-parallel
Strand 3	C	208	220	anti-parallel
Strand 4	C	201	203	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	116	120	anti-parallel
Strand 3	A	125	136	anti-parallel
Strand 4	A	103	108	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	85	first strand
Strand 2	A	116	120	anti-parallel
Strand 3	A	125	136	anti-parallel
Strand 4	A	61	70	anti-parallel
Strand 5	A	38	48	anti-parallel
Strand 6	A	166	170	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	156	158	anti-parallel
Strand 3	A	208	220	anti-parallel
Strand 4	A	149	153	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	156	158	anti-parallel
Strand 3	A	208	220	anti-parallel
Strand 4	A	190	203	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	83	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	E	123	135	anti-parallel
Strand 4	E	56	68	anti-parallel
Strand 5	E	36	51	anti-parallel
Strand 6	E	164	168	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	106	first strand
Strand 2	E	123	135	anti-parallel
Strand 3	E	56	68	anti-parallel
Strand 4	E	36	51	anti-parallel
Strand 5	E	175	176	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	150	156	anti-parallel
Strand 3	E	204	216	anti-parallel
Strand 4	E	186	199	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	83	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	B	123	135	anti-parallel
Strand 4	B	56	68	anti-parallel
Strand 5	B	36	47	anti-parallel
Strand 6	B	164	168	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	106	first strand
Strand 2	B	123	135	anti-parallel
Strand 3	B	56	68	anti-parallel
Strand 4	B	36	47	anti-parallel
Strand 5	B	175	176	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	B	153	155	anti-parallel
Strand 3	B	204	216	anti-parallel
Strand 4	B	186	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DW0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DW0