Analysis of interatomic Contacts of Structural Units in PDB entry:
6DWW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DWW entry

There are 4 chains in PDB entry 6DWW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 81LYS 609
B
A 1 G 16
C
C 1 C 25
D
G 1 A 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6DWW. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
87 106Right-handed alpha
Helix 2
AA2
A
108 113Right-handed 310
Helix 3
AA3
A
114 132Right-handed alpha
Helix 4
AA4
A
136 141Right-handed alpha
Helix 5
AA5
A
143 162Right-handed alpha
Helix 6
AA6
A
162 172Right-handed alpha
Helix 7
AA7
A
220 233Right-handed alpha
Helix 8
AA8
A
234 236Right-handed 310
Helix 9
AA9
A
250 257Right-handed alpha
Helix 10
AB1
A
258 260Right-handed 310
Helix 11
AB2
A
265 280Right-handed alpha
Helix 12
AB3
A
281 283Right-handed 310
Helix 13
AB4
A
284 301Right-handed alpha
Helix 14
AB5
A
303 307Right-handed 310
Helix 15
AB6
A
320 331Right-handed alpha
Helix 16
AB7
A
332 343Right-handed alpha
Helix 17
AB8
A
345 349Right-handed 310
Helix 18
AB9
A
353 375Right-handed alpha
Helix 19
AC1
A
381 383Right-handed 310
Helix 20
AC2
A
384 396Right-handed alpha
Helix 21
AC3
A
403 420Right-handed alpha
Helix 22
AC4
A
421 425Right-handed 310
Helix 23
AC5
A
426 435Right-handed alpha
Helix 24
AC6
A
440 444Right-handed 310
Helix 25
AC7
A
446 468Right-handed alpha
Helix 26
AC8
A
519 528Right-handed alpha
Helix 27
AC9
A
539 546Right-handed alpha
Helix 28
AD1
A
553 562Right-handed alpha
Helix 29
AD2
A
568 582Right-handed alpha
Helix 30
AD3
A
590 607Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6DWW.

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
204 213first strand
Strand 2
A
190 199anti-parallel
Strand 3
A
175 183anti-parallel
Strand 4
A
244 247parallel
Strand 5
A
261 264parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il