Analysis of interatomic Contacts of Structural Units in PDB entry:
6DWZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6DWZ entry

There are 8 chains in PDB entry 6DWZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 81LYS 609
B
G 2 G 16
C
C 1 C 25
D
G 1 C 7
E
ARG 81LYS 609
F
G 2 G 16
G
C 1 C 25
H
G 1 C 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6DWZ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
87 105Right-handed alpha
Helix 2
AA2
A
108 114Right-handed 310
Helix 3
AA3
A
116 132Right-handed alpha
Helix 4
AA4
A
136 141Right-handed alpha
Helix 5
AA5
A
143 162Right-handed alpha
Helix 6
AA6
A
162 172Right-handed alpha
Helix 7
AA7
A
220 233Right-handed alpha
Helix 8
AA8
A
250 257Right-handed alpha
Helix 9
AA9
A
265 280Right-handed alpha
Helix 10
AB1
A
281 302Right-handed alpha
Helix 11
AB2
A
320 332Right-handed alpha
Helix 12
AB3
A
332 343Right-handed alpha
Helix 13
AB4
A
344 349Right-handed 310
Helix 14
AB5
A
353 376Right-handed alpha
Helix 15
AB6
A
381 383Right-handed 310
Helix 16
AB7
A
384 396Right-handed alpha
Helix 17
AB8
A
403 420Right-handed alpha
Helix 18
AB9
A
421 425Right-handed 310
Helix 19
AC1
A
426 435Right-handed alpha
Helix 20
AC2
A
446 459Right-handed alpha
Helix 21
AC3
A
521 529Right-handed alpha
Helix 22
AC4
A
539 546Right-handed alpha
Helix 23
AC5
A
554 563Right-handed alpha
Helix 24
AC6
A
568 582Right-handed alpha
Helix 25
AC7
A
590 608Right-handed alpha
Helix 26
AC8
E
87 93Right-handed alpha
Helix 27
AC9
E
96 105Right-handed alpha
Helix 28
AD1
E
108 112Right-handed 310
Helix 29
AD2
E
114 132Right-handed alpha
Helix 30
AD3
E
136 141Right-handed alpha
Helix 31
AD4
E
143 172Right-handed alpha
Helix 32
AD5
E
220 234Right-handed alpha
Helix 33
AD6
E
250 257Right-handed alpha
Helix 34
AD7
E
265 280Right-handed alpha
Helix 35
AD8
E
281 302Right-handed alpha
Helix 36
AD9
E
320 331Right-handed alpha
Helix 37
AE1
E
332 342Right-handed alpha
Helix 38
AE2
E
345 349Right-handed 310
Helix 39
AE3
E
353 376Right-handed alpha
Helix 40
AE4
E
381 383Right-handed 310
Helix 41
AE5
E
384 397Right-handed alpha
Helix 42
AE6
E
403 420Right-handed alpha
Helix 43
AE7
E
421 425Right-handed 310
Helix 44
AE8
E
426 435Right-handed alpha
Helix 45
AE9
E
440 444Right-handed 310
Helix 46
AF1
E
445 459Right-handed alpha
Helix 47
AF2
E
519 529Right-handed alpha
Helix 48
AF3
E
539 547Right-handed alpha
Helix 49
AF4
E
551 556Right-handed alpha
Helix 50
AF5
E
556 563Right-handed alpha
Helix 51
AF6
E
568 582Right-handed alpha
Helix 52
AF7
E
590 608Right-handed alpha
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There are 2 sheets in PDB entry 6DWZ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
205 213first strand
Strand 2
A
190 198anti-parallel
Strand 3
A
176 183anti-parallel
Strand 4
A
244 247parallel
Strand 5
A
261 264parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
205 213first strand
Strand 2
E
190 198anti-parallel
Strand 3
E
176 183anti-parallel
Strand 4
E
244 247parallel
Strand 5
E
261 264parallel
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