Analysis of interatomic Contacts of Structural Units in PDB entry:
6DXW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6DXW entry

There are 2 chains in PDB entry 6DXW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 29	PRO 356
B	SER 29	ASN 333

There are 59 helices in PDB entry 6DXW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	53	Right-handed alpha
Helix 2	AA2	A	56	72	Right-handed alpha
Helix 3	AA3	A	73	89	Right-handed alpha
Helix 4	AA4	A	94	106	Right-handed alpha
Helix 5	AA5	A	109	120	Right-handed alpha
Helix 6	AA6	A	151	155	Right-handed alpha
Helix 7	AA7	A	200	211	Right-handed alpha
Helix 8	AA8	A	215	227	Right-handed alpha
Helix 9	AA9	A	229	240	Right-handed alpha
Helix 10	AB1	A	275	279	Right-handed 310
Helix 11	AB2	A	295	298	Right-handed 310
Helix 12	AB3	A	299	312	Right-handed alpha
Helix 13	AB4	A	313	316	Right-handed 310
Helix 14	AB5	A	317	325	Right-handed alpha
Helix 15	AB6	A	345	349	Right-handed 310
Helix 16	AB7	B	48	53	Right-handed alpha
Helix 17	AB8	B	56	72	Right-handed alpha
Helix 18	AB9	B	73	89	Right-handed alpha
Helix 19	AC1	B	94	107	Right-handed alpha
Helix 20	AC2	B	109	120	Right-handed alpha
Helix 21	AC3	B	151	155	Right-handed alpha
Helix 22	AC4	B	200	211	Right-handed alpha
Helix 23	AC5	B	215	227	Right-handed alpha
Helix 24	AC6	B	229	240	Right-handed alpha
Helix 25	AC7	B	275	279	Right-handed 310
Helix 26	AC8	B	299	312	Right-handed alpha
Helix 27	AC9	B	313	316	Right-handed 310
Helix 28	AD1	B	317	325	Right-handed alpha
Helix 29	AD2	B	345	349	Right-handed 310
Helix 30	AD3	C	43	47	Right-handed 310
Helix 31	AD4	C	48	53	Right-handed alpha
Helix 32	AD5	C	56	72	Right-handed alpha
Helix 33	AD6	C	73	89	Right-handed alpha
Helix 34	AD7	C	94	107	Right-handed alpha
Helix 35	AD8	C	109	120	Right-handed alpha
Helix 36	AD9	C	151	155	Right-handed alpha
Helix 37	AE1	C	200	211	Right-handed alpha
Helix 38	AE2	C	215	227	Right-handed alpha
Helix 39	AE3	C	229	240	Right-handed alpha
Helix 40	AE4	C	275	279	Right-handed 310
Helix 41	AE5	C	299	312	Right-handed alpha
Helix 42	AE6	C	313	316	Right-handed 310
Helix 43	AE7	C	317	325	Right-handed alpha
Helix 44	AE8	C	345	349	Right-handed 310
Helix 45	AE9	D	48	53	Right-handed alpha
Helix 46	AF1	D	56	72	Right-handed alpha
Helix 47	AF2	D	73	89	Right-handed alpha
Helix 48	AF3	D	94	105	Right-handed alpha
Helix 49	AF4	D	109	120	Right-handed alpha
Helix 50	AF5	D	151	154	Right-handed 310
Helix 51	AF6	D	200	211	Right-handed alpha
Helix 52	AF7	D	215	227	Right-handed alpha
Helix 53	AF8	D	229	240	Right-handed alpha
Helix 54	AF9	D	275	279	Right-handed 310
Helix 55	AG1	D	295	298	Right-handed 310
Helix 56	AG2	D	299	312	Right-handed alpha
Helix 57	AG3	D	313	316	Right-handed 310
Helix 58	AG4	D	317	325	Right-handed alpha
Helix 59	AG5	D	345	349	Right-handed 310

There are 8 sheets in PDB entry 6DXW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	39	first strand
Strand 2	A	156	163	parallel
Strand 3	A	166	174	anti-parallel
Strand 4	A	182	185	anti-parallel
Strand 5	A	189	195	anti-parallel
Strand 6	A	246	251	anti-parallel
Strand 7	A	258	263	anti-parallel
Strand 8	A	268	273	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	285	first strand
Strand 2	A	125	132	anti-parallel
Strand 3	A	138	145	anti-parallel
Strand 4	A	335	341	anti-parallel
Strand 5	A	350	353	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	39	first strand
Strand 2	B	156	163	parallel
Strand 3	B	166	174	anti-parallel
Strand 4	B	182	185	anti-parallel
Strand 5	B	189	195	anti-parallel
Strand 6	B	246	251	anti-parallel
Strand 7	B	258	263	anti-parallel
Strand 8	B	268	273	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	285	first strand
Strand 2	B	125	132	anti-parallel
Strand 3	B	138	145	anti-parallel
Strand 4	B	335	341	anti-parallel
Strand 5	B	350	353	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	39	first strand
Strand 2	C	156	163	parallel
Strand 3	C	166	174	anti-parallel
Strand 4	C	182	185	anti-parallel
Strand 5	C	189	195	anti-parallel
Strand 6	C	246	251	anti-parallel
Strand 7	C	258	263	anti-parallel
Strand 8	C	268	273	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	285	first strand
Strand 2	C	125	132	anti-parallel
Strand 3	C	138	145	anti-parallel
Strand 4	C	335	341	anti-parallel
Strand 5	C	350	353	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	39	first strand
Strand 2	D	156	163	parallel
Strand 3	D	166	174	anti-parallel
Strand 4	D	182	185	anti-parallel
Strand 5	D	189	195	anti-parallel
Strand 6	D	246	251	anti-parallel
Strand 7	D	258	263	anti-parallel
Strand 8	D	268	273	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	285	first strand
Strand 2	D	125	132	anti-parallel
Strand 3	D	138	145	anti-parallel
Strand 4	D	335	341	anti-parallel
Strand 5	D	350	353	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6DXW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6DXW