Analysis of interatomic Contacts of Structural Units in PDB entry:
6E07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E07 entry

There are 3 chains in PDB entry 6E07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	GLN 28	HIS 513
C	GLN 28	LYS 514
F	GLN 28	ASP 286

There are200 helices in PDB entry 6E07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	41	47	Right-handed alpha
Helix 2	AA2	L	47	58	Right-handed alpha
Helix 3	AA3	L	76	85	Right-handed alpha
Helix 4	AA4	L	86	88	Right-handed 310
Helix 5	AA5	L	91	93	Right-handed 310
Helix 6	AA6	L	94	104	Right-handed alpha
Helix 7	AA7	L	114	127	Right-handed alpha
Helix 8	AA8	L	143	145	Right-handed 310
Helix 9	AA9	L	146	155	Right-handed alpha
Helix 10	AB1	L	176	191	Right-handed alpha
Helix 11	AB2	L	192	194	Right-handed 310
Helix 12	AB3	L	201	204	Right-handed 310
Helix 13	AB4	L	205	217	Right-handed alpha
Helix 14	AB5	L	218	222	Right-handed 310
Helix 15	AB6	L	246	252	Right-handed alpha
Helix 16	AB7	L	253	260	Right-handed alpha
Helix 17	AB8	L	262	273	Right-handed alpha
Helix 18	AB9	L	280	294	Right-handed alpha
Helix 19	AC1	L	299	301	Right-handed 310
Helix 20	AC2	L	315	320	Right-handed 310
Helix 21	AC3	L	321	325	Right-handed 310
Helix 22	AC4	L	424	428	Right-handed alpha
Helix 23	AC5	L	435	447	Right-handed alpha
Helix 24	AC6	L	454	476	Right-handed alpha
Helix 25	AC7	L	489	500	Right-handed alpha
Helix 26	AC8	C	41	47	Right-handed alpha
Helix 27	AC9	C	47	58	Right-handed alpha
Helix 28	AD1	C	76	85	Right-handed alpha
Helix 29	AD2	C	86	88	Right-handed 310
Helix 30	AD3	C	91	93	Right-handed 310
Helix 31	AD4	C	94	104	Right-handed alpha
Helix 32	AD5	C	114	127	Right-handed alpha
Helix 33	AD6	C	143	145	Right-handed 310
Helix 34	AD7	C	146	158	Right-handed alpha
Helix 35	AD8	C	176	191	Right-handed alpha
Helix 36	AD9	C	192	194	Right-handed 310
Helix 37	AE1	C	201	204	Right-handed 310
Helix 38	AE2	C	205	217	Right-handed alpha
Helix 39	AE3	C	218	222	Right-handed 310
Helix 40	AE4	C	246	252	Right-handed alpha
Helix 41	AE5	C	253	260	Right-handed alpha
Helix 42	AE6	C	262	273	Right-handed alpha
Helix 43	AE7	C	280	294	Right-handed alpha
Helix 44	AE8	C	299	301	Right-handed 310
Helix 45	AE9	C	315	320	Right-handed 310
Helix 46	AF1	C	321	325	Right-handed 310
Helix 47	AF2	C	424	428	Right-handed alpha
Helix 48	AF3	C	435	447	Right-handed alpha
Helix 49	AF4	C	454	476	Right-handed alpha
Helix 50	AF5	C	489	500	Right-handed alpha
Helix 51	AF6	F	41	47	Right-handed alpha
Helix 52	AF7	F	47	58	Right-handed alpha
Helix 53	AF8	F	76	85	Right-handed alpha
Helix 54	AF9	F	86	88	Right-handed 310
Helix 55	AG1	F	91	93	Right-handed 310
Helix 56	AG2	F	94	104	Right-handed alpha
Helix 57	AG3	F	114	127	Right-handed alpha
Helix 58	AG4	F	143	145	Right-handed 310
Helix 59	AG5	F	146	158	Right-handed alpha
Helix 60	AG6	F	176	191	Right-handed alpha
Helix 61	AG7	F	192	194	Right-handed 310
Helix 62	AG8	F	200	204	Right-handed 310
Helix 63	AG9	F	205	217	Right-handed alpha
Helix 64	AH1	F	218	222	Right-handed 310
Helix 65	AH2	F	246	252	Right-handed alpha
Helix 66	AH3	F	253	260	Right-handed alpha
Helix 67	AH4	F	262	273	Right-handed alpha
Helix 68	AH5	F	280	294	Right-handed alpha
Helix 69	AH6	F	299	301	Right-handed 310
Helix 70	AH7	F	315	320	Right-handed 310
Helix 71	AH8	F	321	325	Right-handed 310
Helix 72	AH9	F	424	428	Right-handed alpha
Helix 73	AI1	F	435	447	Right-handed alpha
Helix 74	AI2	F	454	476	Right-handed alpha
Helix 75	AI3	F	489	500	Right-handed alpha
Helix 76	AI4	N	41	47	Right-handed alpha
Helix 77	AI5	N	47	58	Right-handed alpha
Helix 78	AI6	N	76	85	Right-handed alpha
Helix 79	AI7	N	86	88	Right-handed 310
Helix 80	AI8	N	91	93	Right-handed 310
Helix 81	AI9	N	94	104	Right-handed alpha
Helix 82	AJ1	N	114	127	Right-handed alpha
Helix 83	AJ2	N	143	145	Right-handed 310
Helix 84	AJ3	N	146	158	Right-handed alpha
Helix 85	AJ4	N	176	191	Right-handed alpha
Helix 86	AJ5	N	192	194	Right-handed 310
Helix 87	AJ6	N	200	204	Right-handed 310
Helix 88	AJ7	N	205	217	Right-handed alpha
Helix 89	AJ8	N	218	222	Right-handed 310
Helix 90	AJ9	N	246	252	Right-handed alpha
Helix 91	AK1	N	253	260	Right-handed alpha
Helix 92	AK2	N	262	273	Right-handed alpha
Helix 93	AK3	N	280	294	Right-handed alpha
Helix 94	AK4	N	299	301	Right-handed 310
Helix 95	AK5	N	315	320	Right-handed 310
Helix 96	AK6	N	321	325	Right-handed 310
Helix 97	AK7	N	424	428	Right-handed alpha
Helix 98	AK8	N	435	447	Right-handed alpha
Helix 99	AK9	N	454	476	Right-handed alpha
Helix 100	AL1	N	489	500	Right-handed alpha
Helix 101	AL2	Q	41	47	Right-handed alpha
Helix 102	AL3	Q	47	58	Right-handed alpha
Helix 103	AL4	Q	76	85	Right-handed alpha
Helix 104	AL5	Q	86	88	Right-handed 310
Helix 105	AL6	Q	91	93	Right-handed 310
Helix 106	AL7	Q	94	104	Right-handed alpha
Helix 107	AL8	Q	114	127	Right-handed alpha
Helix 108	AL9	Q	143	145	Right-handed 310
Helix 109	AM1	Q	146	155	Right-handed alpha
Helix 110	AM2	Q	176	191	Right-handed alpha
Helix 111	AM3	Q	192	194	Right-handed 310
Helix 112	AM4	Q	200	204	Right-handed 310
Helix 113	AM5	Q	205	217	Right-handed alpha
Helix 114	AM6	Q	218	222	Right-handed 310
Helix 115	AM7	Q	246	252	Right-handed alpha
Helix 116	AM8	Q	253	260	Right-handed alpha
Helix 117	AM9	Q	262	273	Right-handed alpha
Helix 118	AN1	Q	280	294	Right-handed alpha
Helix 119	AN2	Q	299	301	Right-handed 310
Helix 120	AN3	Q	315	320	Right-handed 310
Helix 121	AN4	Q	321	325	Right-handed 310
Helix 122	AN5	Q	424	428	Right-handed alpha
Helix 123	AN6	Q	435	447	Right-handed alpha
Helix 124	AN7	Q	454	476	Right-handed alpha
Helix 125	AN8	Q	489	500	Right-handed alpha
Helix 126	AN9	T	41	47	Right-handed alpha
Helix 127	AO1	T	47	58	Right-handed alpha
Helix 128	AO2	T	76	85	Right-handed alpha
Helix 129	AO3	T	86	88	Right-handed 310
Helix 130	AO4	T	91	93	Right-handed 310
Helix 131	AO5	T	94	104	Right-handed alpha
Helix 132	AO6	T	114	127	Right-handed alpha
Helix 133	AO7	T	143	145	Right-handed 310
Helix 134	AO8	T	146	158	Right-handed alpha
Helix 135	AO9	T	176	191	Right-handed alpha
Helix 136	AP1	T	192	194	Right-handed 310
Helix 137	AP2	T	201	204	Right-handed 310
Helix 138	AP3	T	205	217	Right-handed alpha
Helix 139	AP4	T	218	222	Right-handed 310
Helix 140	AP5	T	246	252	Right-handed alpha
Helix 141	AP6	T	253	260	Right-handed alpha
Helix 142	AP7	T	262	273	Right-handed alpha
Helix 143	AP8	T	280	294	Right-handed alpha
Helix 144	AP9	T	299	301	Right-handed 310
Helix 145	AQ1	T	315	320	Right-handed 310
Helix 146	AQ2	T	321	325	Right-handed 310
Helix 147	AQ3	T	424	428	Right-handed alpha
Helix 148	AQ4	T	435	447	Right-handed alpha
Helix 149	AQ5	T	454	476	Right-handed alpha
Helix 150	AQ6	T	489	500	Right-handed alpha
Helix 151	AQ7	W	41	47	Right-handed alpha
Helix 152	AQ8	W	47	58	Right-handed alpha
Helix 153	AQ9	W	76	85	Right-handed alpha
Helix 154	AR1	W	86	88	Right-handed 310
Helix 155	AR2	W	91	93	Right-handed 310
Helix 156	AR3	W	94	104	Right-handed alpha
Helix 157	AR4	W	114	127	Right-handed alpha
Helix 158	AR5	W	143	145	Right-handed 310
Helix 159	AR6	W	146	158	Right-handed alpha
Helix 160	AR7	W	176	191	Right-handed alpha
Helix 161	AR8	W	192	194	Right-handed 310
Helix 162	AR9	W	200	204	Right-handed 310
Helix 163	AS1	W	205	217	Right-handed alpha
Helix 164	AS2	W	218	222	Right-handed 310
Helix 165	AS3	W	246	252	Right-handed alpha
Helix 166	AS4	W	253	260	Right-handed alpha
Helix 167	AS5	W	262	273	Right-handed alpha
Helix 168	AS6	W	280	293	Right-handed alpha
Helix 169	AS7	W	299	301	Right-handed 310
Helix 170	AS8	W	315	320	Right-handed 310
Helix 171	AS9	W	321	325	Right-handed 310
Helix 172	AT1	W	424	428	Right-handed alpha
Helix 173	AT2	W	435	447	Right-handed alpha
Helix 174	AT3	W	454	476	Right-handed alpha
Helix 175	AT4	W	489	500	Right-handed alpha
Helix 176	AT5	B	41	47	Right-handed alpha
Helix 177	AT6	B	47	58	Right-handed alpha
Helix 178	AT7	B	76	85	Right-handed alpha
Helix 179	AT8	B	86	88	Right-handed 310
Helix 180	AT9	B	91	93	Right-handed 310
Helix 181	AU1	B	94	104	Right-handed alpha
Helix 182	AU2	B	114	127	Right-handed alpha
Helix 183	AU3	B	143	145	Right-handed 310
Helix 184	AU4	B	146	158	Right-handed alpha
Helix 185	AU5	B	176	191	Right-handed alpha
Helix 186	AU6	B	192	194	Right-handed 310
Helix 187	AU7	B	201	204	Right-handed 310
Helix 188	AU8	B	205	217	Right-handed alpha
Helix 189	AU9	B	218	222	Right-handed 310
Helix 190	AV1	B	246	252	Right-handed alpha
Helix 191	AV2	B	253	260	Right-handed alpha
Helix 192	AV3	B	262	273	Right-handed alpha
Helix 193	AV4	B	280	293	Right-handed alpha
Helix 194	AV5	B	299	301	Right-handed 310
Helix 195	AV6	B	315	320	Right-handed 310
Helix 196	AV7	B	321	325	Right-handed 310
Helix 197	AV8	B	424	428	Right-handed alpha
Helix 198	AV9	B	435	447	Right-handed alpha
Helix 199	AW1	B	454	476	Right-handed alpha
Helix 200	AW2	B	489	500	Right-handed alpha

There are 16 sheets in PDB entry 6E07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	105	109	first strand
Strand 2	L	65	71	parallel
Strand 3	L	32	37	parallel
Strand 4	L	135	140	parallel
Strand 5	L	165	169	parallel
Strand 6	L	196	199	parallel
Strand 7	L	452	453	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	415	423	first strand
Strand 2	L	399	407	anti-parallel
Strand 3	L	389	395	anti-parallel
Strand 4	L	366	373	anti-parallel
Strand 5	L	230	238	anti-parallel
Strand 6	L	353	359	parallel
Strand 7	L	337	343	anti-parallel
Strand 8	L	303	309	anti-parallel
Strand 9	L	480	483	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	109	first strand
Strand 2	C	64	71	parallel
Strand 3	C	31	37	parallel
Strand 4	C	135	140	parallel
Strand 5	C	165	169	parallel
Strand 6	C	196	199	parallel
Strand 7	C	452	453	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	423	first strand
Strand 2	C	399	407	anti-parallel
Strand 3	C	389	395	anti-parallel
Strand 4	C	366	373	anti-parallel
Strand 5	C	230	238	anti-parallel
Strand 6	C	353	359	parallel
Strand 7	C	337	343	anti-parallel
Strand 8	C	303	309	anti-parallel
Strand 9	C	480	483	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	105	109	first strand
Strand 2	F	64	71	parallel
Strand 3	F	31	37	parallel
Strand 4	F	135	140	parallel
Strand 5	F	165	169	parallel
Strand 6	F	196	198	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	415	423	first strand
Strand 2	F	399	407	anti-parallel
Strand 3	F	389	395	anti-parallel
Strand 4	F	366	373	anti-parallel
Strand 5	F	230	238	anti-parallel
Strand 6	F	353	359	parallel
Strand 7	F	337	343	anti-parallel
Strand 8	F	303	309	anti-parallel
Strand 9	F	480	483	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	105	109	first strand
Strand 2	N	64	71	parallel
Strand 3	N	31	37	parallel
Strand 4	N	135	140	parallel
Strand 5	N	165	169	parallel
Strand 6	N	196	198	parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	415	423	first strand
Strand 2	N	399	407	anti-parallel
Strand 3	N	389	395	anti-parallel
Strand 4	N	366	373	anti-parallel
Strand 5	N	230	238	anti-parallel
Strand 6	N	353	359	parallel
Strand 7	N	337	343	anti-parallel
Strand 8	N	303	309	anti-parallel
Strand 9	N	480	483	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	105	109	first strand
Strand 2	Q	65	71	parallel
Strand 3	Q	32	37	parallel
Strand 4	Q	135	140	parallel
Strand 5	Q	165	169	parallel
Strand 6	Q	196	198	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	415	423	first strand
Strand 2	Q	399	407	anti-parallel
Strand 3	Q	389	395	anti-parallel
Strand 4	Q	366	373	anti-parallel
Strand 5	Q	230	238	anti-parallel
Strand 6	Q	353	359	parallel
Strand 7	Q	337	343	anti-parallel
Strand 8	Q	303	309	anti-parallel
Strand 9	Q	480	483	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	105	109	first strand
Strand 2	T	64	71	parallel
Strand 3	T	31	37	parallel
Strand 4	T	135	140	parallel
Strand 5	T	165	169	parallel
Strand 6	T	196	199	parallel
Strand 7	T	452	453	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	415	423	first strand
Strand 2	T	399	407	anti-parallel
Strand 3	T	389	395	anti-parallel
Strand 4	T	366	373	anti-parallel
Strand 5	T	230	238	anti-parallel
Strand 6	T	353	359	parallel
Strand 7	T	337	343	anti-parallel
Strand 8	T	303	309	anti-parallel
Strand 9	T	480	483	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	105	109	first strand
Strand 2	W	64	71	parallel
Strand 3	W	31	37	parallel
Strand 4	W	135	140	parallel
Strand 5	W	165	169	parallel
Strand 6	W	196	198	parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	415	423	first strand
Strand 2	W	399	407	anti-parallel
Strand 3	W	389	395	anti-parallel
Strand 4	W	366	373	anti-parallel
Strand 5	W	230	238	anti-parallel
Strand 6	W	353	359	parallel
Strand 7	W	337	343	anti-parallel
Strand 8	W	303	309	anti-parallel
Strand 9	W	480	483	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	109	first strand
Strand 2	B	64	71	parallel
Strand 3	B	31	37	parallel
Strand 4	B	135	140	parallel
Strand 5	B	165	169	parallel
Strand 6	B	196	199	parallel
Strand 7	B	452	453	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	423	first strand
Strand 2	B	399	407	anti-parallel
Strand 3	B	389	395	anti-parallel
Strand 4	B	366	373	anti-parallel
Strand 5	B	230	238	anti-parallel
Strand 6	B	353	359	parallel
Strand 7	B	337	343	anti-parallel
Strand 8	B	303	309	anti-parallel
Strand 9	B	480	483	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E07

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E07