Analysis of interatomic Contacts of Structural Units in PDB entry:
6E08

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E08 entry

There is 1 chain in PDB entry 6E08 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
L	GLN 28	HIS 513

There are 25 helices in PDB entry 6E08. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	L	41	47	Right-handed alpha
Helix 2	AA2	L	47	58	Right-handed alpha
Helix 3	AA3	L	76	85	Right-handed alpha
Helix 4	AA4	L	86	88	Right-handed 310
Helix 5	AA5	L	91	93	Right-handed 310
Helix 6	AA6	L	94	104	Right-handed alpha
Helix 7	AA7	L	114	127	Right-handed alpha
Helix 8	AA8	L	143	145	Right-handed 310
Helix 9	AA9	L	146	158	Right-handed alpha
Helix 10	AB1	L	176	191	Right-handed alpha
Helix 11	AB2	L	192	194	Right-handed 310
Helix 12	AB3	L	200	204	Right-handed 310
Helix 13	AB4	L	205	217	Right-handed alpha
Helix 14	AB5	L	218	222	Right-handed 310
Helix 15	AB6	L	246	251	Right-handed alpha
Helix 16	AB7	L	253	259	Right-handed alpha
Helix 17	AB8	L	262	273	Right-handed alpha
Helix 18	AB9	L	280	293	Right-handed alpha
Helix 19	AC1	L	299	301	Right-handed 310
Helix 20	AC2	L	315	320	Right-handed 310
Helix 21	AC3	L	321	325	Right-handed 310
Helix 22	AC4	L	424	428	Right-handed alpha
Helix 23	AC5	L	435	447	Right-handed alpha
Helix 24	AC6	L	454	476	Right-handed alpha
Helix 25	AC7	L	489	500	Right-handed alpha

There are 2 sheets in PDB entry 6E08. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	105	109	first strand
Strand 2	L	65	71	parallel
Strand 3	L	32	37	parallel
Strand 4	L	135	140	parallel
Strand 5	L	165	169	parallel
Strand 6	L	196	198	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	415	423	first strand
Strand 2	L	399	407	anti-parallel
Strand 3	L	389	395	anti-parallel
Strand 4	L	366	373	anti-parallel
Strand 5	L	230	238	anti-parallel
Strand 6	L	354	359	parallel
Strand 7	L	337	342	anti-parallel
Strand 8	L	303	309	anti-parallel
Strand 9	L	480	483	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E08

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E08