Analysis of interatomic Contacts of Structural Units in PDB entry:
6E0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E0P entry

There are 12 chains in PDB entry 6E0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 42GLY 140
B
ARG 23GLY 102
C
ALA 10LEU 116
D
LYS 30ALA 124
E
ARG 42GLY 140
F
ARG 23GLY 102
G
LYS 9LEU 116
H
ARG 31ALA 124
I
A 1 T 145
J
A 1 T 145
M
GLU 23LYS 265
N
GLU 23LYS 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6E0P. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
46 55Right-handed alpha
Helix 2
AA2
A
63 77Right-handed alpha
Helix 3
AA3
A
87 116Right-handed alpha
Helix 4
AA4
A
122 134Right-handed alpha
Helix 5
AA5
B
24 29Right-handed 310
Helix 6
AA6
B
30 41Right-handed alpha
Helix 7
AA7
B
49 76Right-handed alpha
Helix 8
AA8
B
82 92Right-handed alpha
Helix 9
AA9
C
16 22Right-handed alpha
Helix 10
AB1
C
26 37Right-handed alpha
Helix 11
AB2
C
45 73Right-handed alpha
Helix 12
AB3
C
79 89Right-handed alpha
Helix 13
AB4
C
90 97Right-handed alpha
Helix 14
AB5
C
112 116Right-handed 310
Helix 15
AB6
D
37 49Right-handed alpha
Helix 16
AB7
D
55 84Right-handed alpha
Helix 17
AB8
D
90 102Right-handed alpha
Helix 18
AB9
D
104 124Right-handed alpha
Helix 19
AC1
E
46 55Right-handed alpha
Helix 20
AC2
E
63 77Right-handed alpha
Helix 21
AC3
E
87 116Right-handed alpha
Helix 22
AC4
E
122 134Right-handed alpha
Helix 23
AC5
F
24 29Right-handed 310
Helix 24
AC6
F
30 41Right-handed alpha
Helix 25
AC7
F
49 76Right-handed alpha
Helix 26
AC8
F
82 92Right-handed alpha
Helix 27
AC9
G
16 22Right-handed alpha
Helix 28
AD1
G
26 37Right-handed alpha
Helix 29
AD2
G
45 73Right-handed alpha
Helix 30
AD3
G
79 89Right-handed alpha
Helix 31
AD4
G
90 97Right-handed alpha
Helix 32
AD5
G
112 116Right-handed 310
Helix 33
AD6
H
37 49Right-handed alpha
Helix 34
AD7
H
55 84Right-handed alpha
Helix 35
AD8
H
90 102Right-handed alpha
Helix 36
AD9
H
104 123Right-handed alpha
Helix 37
AE1
M
50 52Right-handed 310
Helix 38
AE2
N
50 52Right-handed 310
Helix 39
AE3
N
84 87Right-handed 310
Helix 40
AE4
N
109 113Right-handed 310
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There are 24 sheets in PDB entry 6E0P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
85 86first strand
Strand 2
B
80 81parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
120 121first strand
Strand 2
B
45 46parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 98first strand
Strand 2
G
100 102parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
42 43first strand
Strand 2
D
88 89parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
77 78first strand
Strand 2
D
53 54parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
100 102first strand
Strand 2
F
96 98parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
85 86first strand
Strand 2
F
80 81parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
120 121first strand
Strand 2
F
45 46parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
42 43first strand
Strand 2
H
88 89parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
77 78first strand
Strand 2
H
53 54parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
25 28first strand
Strand 2
M
40 47anti-parallel
Strand 3
M
100 105anti-parallel
Strand 4
M
90 95anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
32 34first strand
Strand 2
M
136 140parallel
Strand 3
M
114 122anti-parallel
Strand 4
M
54 62anti-parallel
Strand 5
M
66 73anti-parallel
Strand 6
M
80 82anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
32 34first strand
Strand 2
M
136 140parallel
Strand 3
M
114 122anti-parallel
Strand 4
M
129 132anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
163 164first strand
Strand 2
M
177 182anti-parallel
Strand 3
M
228 233anti-parallel
Strand 4
M
220 225anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
168 171first strand
Strand 2
M
260 264parallel
Strand 3
M
242 248anti-parallel
Strand 4
M
191 196anti-parallel
Strand 5
M
203 207anti-parallel
Strand 6
M
211 212anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
168 171first strand
Strand 2
M
260 264parallel
Strand 3
M
242 248anti-parallel
Strand 4
M
255 256anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
25 28first strand
Strand 2
N
44 47anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
32 34first strand
Strand 2
N
136 140parallel
Strand 3
N
114 122anti-parallel
Strand 4
N
54 62anti-parallel
Strand 5
N
66 73anti-parallel
Strand 6
N
80 82anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
32 34first strand
Strand 2
N
136 140parallel
Strand 3
N
114 122anti-parallel
Strand 4
N
129 132anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
39 40first strand
Strand 2
N
100 106anti-parallel
Strand 3
N
90 95anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
162 163first strand
Strand 2
N
182 183anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
168 171first strand
Strand 2
N
261 264parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
177 180first strand
Strand 2
N
228 233anti-parallel
Strand 3
N
220 225anti-parallel
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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
N
211 212first strand
Strand 2
N
203 207anti-parallel
Strand 3
N
191 196anti-parallel
Strand 4
N
243 248anti-parallel
Strand 5
N
255 256anti-parallel
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