Analysis of interatomic Contacts of Structural Units in PDB entry:
6E2P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E2P entry

There are 4 chains in PDB entry 6E2P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 38	GLY 515
B	VAL 41	THR 514
C	ARG 866	GLN 885
D	LYS 868	GLN 885

There are 34 helices in PDB entry 6E2P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	75	Right-handed alpha
Helix 2	AA2	A	81	83	Right-handed 310
Helix 3	AA3	A	146	163	Right-handed alpha
Helix 4	AA4	A	171	193	Right-handed alpha
Helix 5	AA5	A	196	202	Right-handed alpha
Helix 6	AA6	A	205	210	Right-handed 310
Helix 7	AA7	A	211	219	Right-handed alpha
Helix 8	AA8	A	222	239	Right-handed alpha
Helix 9	AA9	A	246	262	Right-handed alpha
Helix 10	AB1	A	263	267	Right-handed 310
Helix 11	AB2	A	310	314	Right-handed 310
Helix 12	AB3	A	319	321	Right-handed 310
Helix 13	AB4	A	358	377	Right-handed alpha
Helix 14	AB5	A	384	388	Right-handed 310
Helix 15	AB6	A	389	398	Right-handed alpha
Helix 16	AB7	A	405	416	Right-handed alpha
Helix 17	AB8	A	473	482	Right-handed alpha
Helix 18	AB9	B	64	76	Right-handed alpha
Helix 19	AC1	B	78	83	Right-handed alpha
Helix 20	AC2	B	146	163	Right-handed alpha
Helix 21	AC3	B	171	193	Right-handed alpha
Helix 22	AC4	B	196	204	Right-handed alpha
Helix 23	AC5	B	205	210	Right-handed 310
Helix 24	AC6	B	211	219	Right-handed alpha
Helix 25	AC7	B	222	239	Right-handed alpha
Helix 26	AC8	B	246	262	Right-handed alpha
Helix 27	AC9	B	263	265	Right-handed 310
Helix 28	AD1	B	319	321	Right-handed 310
Helix 29	AD2	B	360	377	Right-handed alpha
Helix 30	AD3	B	389	398	Right-handed alpha
Helix 31	AD4	B	405	417	Right-handed alpha
Helix 32	AD5	B	473	482	Right-handed alpha
Helix 33	AD6	C	877	881	Right-handed 310
Helix 34	AD7	D	877	885	Right-handed 310

There are 14 sheets in PDB entry 6E2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	57	first strand
Strand 2	A	39	43	anti-parallel
Strand 3	A	111	116	parallel
Strand 4	A	85	89	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	101	102	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	142	first strand
Strand 2	A	131	134	anti-parallel
Strand 3	A	511	513	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	274	first strand
Strand 2	A	284	291	anti-parallel
Strand 3	A	295	300	anti-parallel
Strand 4	A	315	318	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	328	first strand
Strand 2	A	340	346	anti-parallel
Strand 3	A	352	356	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	464	first strand
Strand 2	A	446	456	anti-parallel
Strand 3	A	434	443	anti-parallel
Strand 4	A	422	427	anti-parallel
Strand 5	A	497	498	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	488	first strand
Strand 2	A	491	493	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	B	53	54	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	101	102	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	85	89	anti-parallel
Strand 3	B	112	116	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	142	first strand
Strand 2	B	131	134	anti-parallel
Strand 3	B	511	513	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	318	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	285	291	anti-parallel
Strand 4	B	267	273	anti-parallel
Strand 5	B	352	356	anti-parallel
Strand 6	B	340	346	anti-parallel
Strand 7	B	323	329	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	427	first strand
Strand 2	B	434	443	anti-parallel
Strand 3	B	446	456	anti-parallel
Strand 4	B	462	464	anti-parallel
Strand 5	B	470	471	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	486	first strand
Strand 2	B	493	494	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E2P

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E2P