Analysis of interatomic Contacts of Structural Units in PDB entry:
6E3Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6E3Y entry

There are 7 chains in PDB entry 6E3Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	ALA 1	PHE 37
N	GLN 1	VAL 126
A	GLU 15	LEU 394
B	ASP 5	ASN 340
G	LYS 14	ARG 62
R	GLN 33	TYR 402
E	GLU 29	ARG 143

There are 34 helices in PDB entry 6E3Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	7	20	Right-handed alpha
Helix 2	AA2	N	28	32	Right-handed 310
Helix 3	AA3	N	62	65	Right-handed 310
Helix 4	AA4	N	87	91	Right-handed 310
Helix 5	AA5	A	16	40	Right-handed alpha
Helix 6	AA6	A	233	241	Right-handed 310
Helix 7	AA7	A	264	278	Right-handed alpha
Helix 8	AA8	A	312	316	Right-handed 310
Helix 9	AA9	A	331	351	Right-handed alpha
Helix 10	AB1	A	372	391	Right-handed alpha
Helix 11	AB2	B	6	26	Right-handed alpha
Helix 12	AB3	B	29	34	Right-handed alpha
Helix 13	AB4	G	15	24	Right-handed alpha
Helix 14	AB5	G	29	44	Right-handed alpha
Helix 15	AB6	G	45	48	Right-handed 310
Helix 16	AB7	R	34	54	Right-handed alpha
Helix 17	AB8	R	125	130	Right-handed alpha
Helix 18	AB9	R	130	167	Right-handed alpha
Helix 19	AC1	R	171	198	Right-handed alpha
Helix 20	AC2	R	209	242	Right-handed alpha
Helix 21	AC3	R	253	260	Right-handed alpha
Helix 22	AC4	R	263	277	Right-handed alpha
Helix 23	AC5	R	280	284	Right-handed 310
Helix 24	AC6	R	291	321	Right-handed alpha
Helix 25	AC7	R	330	346	Right-handed alpha
Helix 26	AC8	R	347	350	Right-handed 310
Helix 27	AC9	R	364	375	Right-handed alpha
Helix 28	AD1	R	375	383	Right-handed alpha
Helix 29	AD2	R	388	399	Right-handed alpha
Helix 30	AD3	E	30	52	Right-handed alpha
Helix 31	AD4	E	53	56	Right-handed 310
Helix 32	AD5	E	58	81	Right-handed alpha
Helix 33	AD6	E	86	101	Right-handed alpha
Helix 34	AD7	E	118	143	Right-handed alpha

There are 12 sheets in PDB entry 6E3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	8	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	11	first strand
Strand 2	N	122	125	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	213	first strand
Strand 2	A	218	224	anti-parallel
Strand 3	A	41	46	parallel
Strand 4	A	243	248	parallel
Strand 5	A	286	291	parallel
Strand 6	A	359	360	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	135	139	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	278	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	68	69	first strand
Strand 2	R	74	75	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	82	87	first strand
Strand 2	R	100	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6E3Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
6E3Y