Analysis of interatomic Contacts of Structural Units in PDB entry:
6E7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6E7P entry

There are 4 chains in PDB entry 6E7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 38HIS 526
B
GLU 38HIS 526
C
GLU 38HIS 526
D
GLU 38HIS 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 6E7P. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
41 48Right-handed alpha
Helix 2
AA2
A
51 56Right-handed alpha
Helix 3
AA3
A
63 106Right-handed alpha
Helix 4
AA4
A
122 138Right-handed alpha
Helix 5
AA5
A
138 143Right-handed alpha
Helix 6
AA6
A
224 228Right-handed 310
Helix 7
AA7
A
290 294Right-handed 310
Helix 8
AA8
A
295 300Right-handed alpha
Helix 9
AA9
A
301 326Right-handed alpha
Helix 10
AB1
A
327 333Right-handed alpha
Helix 11
AB2
A
352 373Right-handed alpha
Helix 12
AB3
A
384 398Right-handed alpha
Helix 13
AB4
A
401 406Right-handed alpha
Helix 14
AB5
A
410 447Right-handed alpha
Helix 15
AB6
A
456 464Right-handed alpha
Helix 16
AB7
A
464 469Right-handed alpha
Helix 17
AB8
A
473 481Right-handed alpha
Helix 18
AB9
A
487 506Right-handed alpha
Helix 19
AC1
A
509 526Right-handed alpha
Helix 20
AC2
B
41 48Right-handed alpha
Helix 21
AC3
B
51 56Right-handed alpha
Helix 22
AC4
B
63 106Right-handed alpha
Helix 23
AC5
B
122 138Right-handed alpha
Helix 24
AC6
B
138 143Right-handed alpha
Helix 25
AC7
B
224 228Right-handed 310
Helix 26
AC8
B
290 294Right-handed 310
Helix 27
AC9
B
295 300Right-handed alpha
Helix 28
AD1
B
301 326Right-handed alpha
Helix 29
AD2
B
327 333Right-handed alpha
Helix 30
AD3
B
352 373Right-handed alpha
Helix 31
AD4
B
384 398Right-handed alpha
Helix 32
AD5
B
401 406Right-handed alpha
Helix 33
AD6
B
410 447Right-handed alpha
Helix 34
AD7
B
456 464Right-handed alpha
Helix 35
AD8
B
464 469Right-handed alpha
Helix 36
AD9
B
473 481Right-handed alpha
Helix 37
AE1
B
487 506Right-handed alpha
Helix 38
AE2
B
509 526Right-handed alpha
Helix 39
AE3
C
41 48Right-handed alpha
Helix 40
AE4
C
51 56Right-handed alpha
Helix 41
AE5
C
63 106Right-handed alpha
Helix 42
AE6
C
122 138Right-handed alpha
Helix 43
AE7
C
138 143Right-handed alpha
Helix 44
AE8
C
224 228Right-handed 310
Helix 45
AE9
C
290 294Right-handed 310
Helix 46
AF1
C
295 300Right-handed alpha
Helix 47
AF2
C
301 326Right-handed alpha
Helix 48
AF3
C
327 333Right-handed alpha
Helix 49
AF4
C
352 373Right-handed alpha
Helix 50
AF5
C
384 398Right-handed alpha
Helix 51
AF6
C
401 406Right-handed alpha
Helix 52
AF7
C
410 447Right-handed alpha
Helix 53
AF8
C
456 464Right-handed alpha
Helix 54
AF9
C
464 469Right-handed alpha
Helix 55
AG1
C
473 481Right-handed alpha
Helix 56
AG2
C
487 506Right-handed alpha
Helix 57
AG3
C
509 526Right-handed alpha
Helix 58
AG4
D
41 48Right-handed alpha
Helix 59
AG5
D
51 56Right-handed alpha
Helix 60
AG6
D
63 106Right-handed alpha
Helix 61
AG7
D
122 138Right-handed alpha
Helix 62
AG8
D
138 143Right-handed alpha
Helix 63
AG9
D
224 228Right-handed 310
Helix 64
AH1
D
290 294Right-handed 310
Helix 65
AH2
D
295 300Right-handed alpha
Helix 66
AH3
D
301 326Right-handed alpha
Helix 67
AH4
D
327 333Right-handed alpha
Helix 68
AH5
D
352 373Right-handed alpha
Helix 69
AH6
D
384 398Right-handed alpha
Helix 70
AH7
D
401 406Right-handed alpha
Helix 71
AH8
D
410 447Right-handed alpha
Helix 72
AH9
D
456 464Right-handed alpha
Helix 73
AI1
D
464 469Right-handed alpha
Helix 74
AI2
D
473 481Right-handed alpha
Helix 75
AI3
D
487 506Right-handed alpha
Helix 76
AI4
D
509 526Right-handed alpha
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There are 8 sheets in PDB entry 6E7P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
118 119first strand
Strand 2
A
271 276anti-parallel
Strand 3
A
255 263anti-parallel
Strand 4
A
230 238anti-parallel
Strand 5
A
148 149anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
118 119first strand
Strand 2
A
271 276anti-parallel
Strand 3
A
255 263anti-parallel
Strand 4
A
230 238anti-parallel
Strand 5
A
163 166anti-parallel
Strand 6
A
192 195anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
118 119first strand
Strand 2
B
271 276anti-parallel
Strand 3
B
255 263anti-parallel
Strand 4
B
230 238anti-parallel
Strand 5
B
148 149anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
118 119first strand
Strand 2
B
271 276anti-parallel
Strand 3
B
255 263anti-parallel
Strand 4
B
230 238anti-parallel
Strand 5
B
163 166anti-parallel
Strand 6
B
192 195anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
118 119first strand
Strand 2
C
271 276anti-parallel
Strand 3
C
255 263anti-parallel
Strand 4
C
230 238anti-parallel
Strand 5
C
148 149anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
118 119first strand
Strand 2
C
271 276anti-parallel
Strand 3
C
255 263anti-parallel
Strand 4
C
230 238anti-parallel
Strand 5
C
163 166anti-parallel
Strand 6
C
192 195anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
118 119first strand
Strand 2
D
271 276anti-parallel
Strand 3
D
255 263anti-parallel
Strand 4
D
230 238anti-parallel
Strand 5
D
148 149anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
118 119first strand
Strand 2
D
271 276anti-parallel
Strand 3
D
255 263anti-parallel
Strand 4
D
230 238anti-parallel
Strand 5
D
163 166anti-parallel
Strand 6
D
192 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il